NHLH2 (Sus scrofa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSSSCG00000006744 T037408_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nhlh2
M00756_2.00
Mus musculus
NKCAGCTGHN

NDCAGCTGMN
PBM
Weirauch et al.(2013)
pTH3037
0.914 1.000
NHLH2
M04177_2.00
Homo sapiens
DDGNMGCAGCTGCGYCMH

DKGRCGCAGCTGCKNCHH
SELEX
Yin et al.(2017)
NHLH2_FL_HT-SELEX
0.914 1.000
NHLH2
M09878_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEN2_Q2
0.914 1.000
NHLH2
M04178_2.00
Homo sapiens
DGGNMBCAGCTGCGYCCH

DGGRCGCAGCTGVKNCCH
SELEX
Yin et al.(2017)
NHLH2_FL_Methyl-HT-SELEX
0.914 1.000
NHLH1
M02796_2.00
Homo sapiens
CGCAGCTGCB

VGCAGCTGCG
SELEX
Jolma et al.(2013)
NHLH1_1
0.914 0.981
NHLH1
M02797_2.00
Homo sapiens
VGCAGCTGCK

MGCAGCTGCB
SELEX
Jolma et al.(2013)
NHLH1_2
0.914 0.981
NHLH1
M04162_2.00
Homo sapiens
NDGNMKCAGCTGCGYCMH

DKGRCGCAGCTGMKNCHN
SELEX
Yin et al.(2017)
NHLH1_eDBD_HT-SELEX
0.914 0.981
NHLH1
M04164_2.00
Homo sapiens
NDGNMKCAGCTGCGYCMH

DKGRCGCAGCTGMKNCHN
SELEX
Yin et al.(2017)
NHLH1_FL_HT-SELEX
0.914 0.981
Nhlh1
M08773_2.00
Mus musculus
BKGGNMNCAGCTGCGBCCYY

RRGGVCGCAGCTGNKNCCMV
Misc
Kulakovskiy et al.(2013)
HEN1_MOUSE.H11MO.0.C
0.914 0.981
NHLH1
M09875_2.00
Homo sapiens
NNDGGNMVCAGCTGVGNCCNNN

NNNGGNCBCAGCTGBKNCCHNN
Transfac
Matys et al.(2006)
V$HEN1_01
0.914 0.981
NHLH1
M09876_2.00
Homo sapiens
NDRGGVMGCAGCTGMKNCCHHN

NDDGGNMKCAGCTGCKBCCYHN
Transfac
Matys et al.(2006)
V$HEN1_02
0.914 0.981
NHLH1
M04163_2.00
Homo sapiens
NRGBMKCAGCTGCGYCCH

DGGRCGCAGCTGMKVCYN
SELEX
Yin et al.(2017)
NHLH1_eDBD_Methyl-HT-SELEX
0.914 0.981
NHLH1
M04165_2.00
Homo sapiens
DGGNMBCAGCTGCGYCCH

DGGRCGCAGCTGVKNCCH
SELEX
Yin et al.(2017)
NHLH1_FL_Methyl-HT-SELEX
0.914 0.981
HLH4C
M03609_2.00
Drosophila melanogaster
DDNCRCAGCTGYGNHH

DDNCRCAGCTGYGNHH
SELEX
Nitta et al.(2015)
HLH4C_1
0.891 0.904
HLH4C
M03610_2.00
Drosophila melanogaster
DRSMYCAGCTGVKSYH

DRSMBCAGCTGRKSYH
SELEX
Nitta et al.(2015)
HLH4C_2
0.891 0.904
HLH4C
M03611_2.00
Drosophila melanogaster
NRBMYCAGCTGYGNHH

DDNCRCAGCTGRKVYN
SELEX
Nitta et al.(2015)
HLH4C_3
0.891 0.904
HLH4C
M05963_2.00
Drosophila melanogaster
CACCTGMDCC

GGHKCAGGTG
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_3_FBgn0011277
0.891 0.904
HLH4C
M05964_2.00
Drosophila melanogaster
MCAYCTGMGMMM

KKKCKCAGRTGK
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_4_FBgn0011277
0.891 0.904
HLH4C
M05965_2.00
Drosophila melanogaster
VNHHVCACCTGMBNC

GNVKCAGGTGBDDNB
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_FBgn0011277
0.891 0.904
HLH4C
M05966_2.00
Drosophila melanogaster
RGSMYCAGCTGCGYY

RRCGCAGCTGRKSCY
B1H
Zhu et al.(2011)
HLH4C_SANGER_5_FBgn0011277
0.891 0.904
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000007194 bHLH 78 130

Links

Other bHLH family TFs
Other Sus scrofa TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g01085 Acanthocheilonema viteae nAv.1.0.1.g01085 I 0.000
nAv.1.0.1.g09212 Acanthocheilonema viteae nAv.1.0.1.g09212 I 0.000
ANCCAN_13991 Ancylostoma caninum ANCCAN_13991 I 0.000
ANCDUO_19569 Ancylostoma duodenale ANCDUO_19569 I 0.000
ASIM_0001608201 Anisakis simplex ASIM_0001608201 I 0.000
ASIM_0000241101 Anisakis simplex ASIM_0000241101 I 0.000
Bm2567 Brugia malayi Bm2567 D 0.000
BTMF_0001653601 Brugia timori BTMF_0001653601 I 0.000
BTMF_0001659501 Brugia timori BTMF_0001659501 I 0.000
BXY_0200700 Bursaphelenchus xylophilus BXY_0200700 I 0.000
BXY_0352300 Bursaphelenchus xylophilus BXY_0352300 I 0.000
CBN06605 Caenorhabditis brenneri CBN06605 D 0.000
CBG09413 Caenorhabditis briggsae CBG09413 D 0.000
dmd-3 Caenorhabditis elegans WBGene00012832 D 0.000
dmd-10 Caenorhabditis elegans WBGene00007929 D 0.000
CJA37832 Caenorhabditis japonica CJA37832 I 0.000
CJA05020 Caenorhabditis japonica CJA05020 I 0.000
CRE31027 Caenorhabditis remanei CRE31027 I 0.000
nDi.2.2.2.g08811 Dirofilaria immitis nDi.2.2.2.g08811 I 0.000
nDi.2.2.2.g10419 Dirofilaria immitis nDi.2.2.2.g10419 I 0.000
DME_0001004201 Dracunculus medinensis DME_0001004201 I 0.000
EEL_0000689901 Elaeophora elaphi EEL_0000689901 I 0.000
EVEC_0001123001 Enterobius vermicularis EVEC_0001123001 I 0.000
Hba_18605 Heterorhabditis bacteriophora Hba_18605 I 0.000
nLs.2.1.2.g05589 Litomosoides sigmodontis nLs.2.1.2.g05589 I 0.000
LOAG_11460 Loa loa LOAG_11460 I 0.000
NECAME_07661 Necator americanus NECAME_07661 I 0.000
NBR_0000774001 Nippostrongylus brasiliensis NBR_0000774001 I 0.000
OESDEN_09202 Oesophagostomum dentatum OESDEN_09202 I 0.000
nOo.2.0.1.g12565 Onchocerca ochengi nOo.2.0.1.g12565 I 0.000
nOo.2.0.1.g05035 Onchocerca ochengi nOo.2.0.1.g05035 I 0.000
WBGene00242643 Onchocerca volvulus WBGene00242643 I 0.000
PTRK_0001597400 Parastrongyloides trichosuri PTRK_0001597400 I 0.000
CJA05633_CONSTRUCT PBM CONSTRUCTS CJA05633_CONSTRUCT D 0.000
L596_g998 Steinernema carpocapsae L596_g998 I 0.000
L889_g10733 Steinernema feltiae L889_g10733 I 0.000
L893_g31098 Steinernema glaseri L893_g31098 I 0.000
L898_g33808 Steinernema monticolum L898_g33808 I 0.000
L898_g30067 Steinernema monticolum L898_g30067 I 0.000
L892_g22881 Steinernema scapterisci L892_g22881 I 0.000
L892_g27879 Steinernema scapterisci L892_g27879 I 0.000
SPAL_0001233100 Strongyloides papillosus SPAL_0001233100 I 0.000
SVE_0753200 Strongyloides venezuelensis SVE_0753200 I 0.000
SVE_1703300 Strongyloides venezuelensis SVE_1703300 I 0.000
TELCIR_05158 Teladorsagia circumcincta TELCIR_05158 I 0.000
TCLT_0000243901 Thelazia callipaeda TCLT_0000243901 I 0.000
WUBG_11979 Wuchereria bancrofti WUBG_11979 D 0.000