scaffold_403653.1 (Arabidopsis lyrata)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 scaffold_403653.1 T044508_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_403653.1 bHLH 177 228

Links

Other bHLH family TFs
Other Arabidopsis lyrata TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.25993s0085 Boechera stricta Bostr.25993s0085 N 0.914
Bo4g006950 Brassica oleracea Bo4g006950 N 0.911
Ciclev10020360m.g Citrus clementina Ciclev10020360m.g N 0.892
GLYMA07G05500 Glycine max GLYMA07G05500 N 0.892
cassava29786.valid.m1 Manihot esculenta cassava29786.valid.m1 N 0.892
gene18608-v1.0-hybrid Fragaria vesca gene18608-v1.0-hybrid N 0.892
evm.TU.supercontig_57.85 Carica papaya evm.TU.supercontig_57.85 N 0.892
Pavir.Db01842 Panicum virgatum Pavir.Db01842 N 0.892
Ca_22410 Cicer arietinum Ca_22410 N 0.892
30076.m004456 Ricinus communis 30076.m004456 N 0.892
chr3.CM0208.290.nc Lotus japonicus chr3.CM0208.290.nc N 0.892
Lus10010101.g Linum usitatissimum Lus10010101.g N 0.892
orange1.1g013752m.g Citrus sinensis orange1.1g013752m.g N 0.892
Lus10012603.g Linum usitatissimum Lus10012603.g N 0.892
GLYMA16G02020 Glycine max GLYMA16G02020 N 0.892
OBART10G08120 Oryza barthii OBART10G08120 N 0.889
OGLUM02G33770 Oryza glumaepatula OGLUM02G33770 N 0.889
OGLUM10G07850 Oryza glumaepatula OGLUM10G07850 N 0.889
OMERI02G31750 Oryza meridionalis OMERI02G31750 N 0.889
LPERR02G27220 Leersia perrieri LPERR02G27220 N 0.889
OB10G16200 Oryza brachyantha OB10G16200 N 0.889
Pavir.Aa00538 Panicum virgatum Pavir.Aa00538 N 0.889
OB02G40170 Oryza brachyantha OB02G40170 N 0.889
OB03G16590 Oryza brachyantha OB03G16590 N 0.889
Gorai.007G113200 Gossypium raimondii Gorai.007G113200 N 0.889
OBART02G33270 Oryza barthii OBART02G33270 N 0.889
LPERR10G05620 Leersia perrieri LPERR10G05620 N 0.889
OPUNC03G06240 Oryza punctata OPUNC03G06240 N 0.889
Sb04g027280 Sorghum bicolor Sb04g027280 N 0.889
Sb01g044640 Sorghum bicolor Sb01g044640 N 0.889
Sb0012s004780 Sorghum bicolor Sb0012s004780 N 0.889
PGSC0003DMG400016145 Solanum tuberosum PGSC0003DMG400016145 N 0.889
Si017701m.g Setaria italica Si017701m.g N 0.889
Si036568m.g Setaria italica Si036568m.g N 0.889
TCM_005028 Theobroma cacao TCM_005028 N 0.889
Solyc11g010340.1 Solanum lycopersicum Solyc11g010340.1 N 0.889
Si038653m.g Setaria italica Si038653m.g N 0.889
OS10G0376900 Oryza sativa OS10G0376900 N 0.889
ORUFI10G08570 Oryza rufipogon ORUFI10G08570 N 0.889
Pavir.Ia02758 Panicum virgatum Pavir.Ia02758 N 0.889
OPUNC02G30580 Oryza punctata OPUNC02G30580 N 0.889
ONIVA10G07810 Oryza nivara ONIVA10G07810 N 0.889
OPUNC10G07050 Oryza punctata OPUNC10G07050 N 0.889
ORGLA02G0287300 Oryza glaberrima ORGLA02G0287300 N 0.889
ORUFI02G34810 Oryza rufipogon ORUFI02G34810 N 0.889
ORGLA10G0067600 Oryza glaberrima ORGLA10G0067600 N 0.889
AC233899.1_FG002 Zea mays AC233899.1_FG002 N 0.889
ONIVA02G35790 Oryza nivara ONIVA02G35790 N 0.889
Gorai.007G113300 Gossypium raimondii Gorai.007G113300 N 0.889
GRMZM2G008691 Zea mays GRMZM2G008691 N 0.889
Pavir.Ib02778 Panicum virgatum Pavir.Ib02778 N 0.889
GRMZM2G045883 Zea mays GRMZM2G045883 N 0.889
BRADI3G38510 Brachypodium distachyon BRADI3G38510 N 0.889
BGIOSGA032814 Oryza indica BGIOSGA032814 N 0.889
BRADI3G58360 Brachypodium distachyon BRADI3G58360 N 0.889
Pavir.J40759 Panicum virgatum Pavir.J40759 N 0.889
BGIOSGA005582 Oryza indica BGIOSGA005582 N 0.889
BRADI1G71990 Brachypodium distachyon BRADI1G71990 N 0.889
Pavir.Ia04907 Panicum virgatum Pavir.Ia04907 N 0.889
Pavir.Ia03109 Panicum virgatum Pavir.Ia03109 N 0.889
Bra040483 Brassica rapa Bra040483 N 0.884
Carubv10023506m.g Capsella rubella Carubv10023506m.g N 0.884
Bo4g197360 Brassica oleracea Bo4g197360 N 0.884
Cagra.0050s0019 Capsella grandiflora Cagra.0050s0019 N 0.884
Thhalv10001803m.g Eutrema salsugineum Thhalv10001803m.g N 0.884
BHLH70 Arabidopsis thaliana AT2G46810 N 0.884
Bra004505 Brassica rapa Bra004505 N 0.881
Bo8g097470 Brassica oleracea Bo8g097470 N 0.880
Thhalv10006045m.g Eutrema salsugineum Thhalv10006045m.g N 0.880
Bostr.13158s0200 Boechera stricta Bostr.13158s0200 N 0.880
Bra007644 Brassica rapa Bra007644 N 0.880
Carubv10018614m.g Capsella rubella Carubv10018614m.g N 0.880
Cagra.0483s0048 Capsella grandiflora Cagra.0483s0048 N 0.880
fgenesh2_kg.5__2692__AT3G61950.1 Arabidopsis lyrata fgenesh2_kg.5__2692__AT3G61950.1 N 0.880
BHLH67 Arabidopsis thaliana AT3G61950 N 0.880
gene18888-v1.0-hybrid Fragaria vesca gene18888-v1.0-hybrid N 0.868
fgenesh1_pm.C_scaffold_6002861 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002861 N 0.868
chr1.LjT16B05.110.nd Lotus japonicus chr1.LjT16B05.110.nd N 0.864
Bostr.7365s0007 Boechera stricta Bostr.7365s0007 N 0.864
Sb02g027210 Sorghum bicolor Sb02g027210 N 0.864
Thhalv10028815m.g Eutrema salsugineum Thhalv10028815m.g N 0.864
OPUNC09G11790 Oryza punctata OPUNC09G11790 N 0.864
Bra008017 Brassica rapa Bra008017 N 0.864
BHLH96 Arabidopsis thaliana AT1G72210 N 0.864
TCM_034439 Theobroma cacao TCM_034439 N 0.864
Bra016080 Brassica rapa Bra016080 N 0.864
BHLH57 Arabidopsis thaliana AT4G01460 N 0.864
VIT_18s0001g06650 Vitis vinifera VIT_18s0001g06650 N 0.864
Traes_5BL_DA72CE20D Triticum aestivum Traes_5BL_DA72CE20D N 0.864
BGIOSGA030936 Oryza indica BGIOSGA030936 N 0.864
Thhalv10018867m.g Eutrema salsugineum Thhalv10018867m.g N 0.864
Bo9g004020 Brassica oleracea Bo9g004020 N 0.864
cassava35271.valid.m1 Manihot esculenta cassava35271.valid.m1 N 0.864
cassava34492.m1 Manihot esculenta cassava34492.m1 N 0.864
ORUFI09G14410 Oryza rufipogon ORUFI09G14410 N 0.864
ORGLA09G0101900 Oryza glaberrima ORGLA09G0101900 N 0.864
Bo6g092570 Brassica oleracea Bo6g092570 N 0.864
POPTR_0002s10230 Populus trichocarpa POPTR_0002s10230 N 0.864
cassava31098.valid.m1 Manihot esculenta cassava31098.valid.m1 N 0.864
Bo2g075510 Brassica oleracea Bo2g075510 N 0.864
OS09G0468700 Oryza sativa OS09G0468700 N 0.864
Bostr.10273s0131 Boechera stricta Bostr.10273s0131 N 0.864
Bra003886 Brassica rapa Bra003886 N 0.864
Carubv10020657m.g Capsella rubella Carubv10020657m.g N 0.864
GLYMA02G37313 Glycine max GLYMA02G37313 N 0.864
Gorai.013G204300 Gossypium raimondii Gorai.013G204300 N 0.864
OB09G19960 Oryza brachyantha OB09G19960 N 0.864
GSMUA_Achr8G17650_001 Musa acuminata GSMUA_Achr8G17650_001 N 0.864
orange1.1g020210m.g Citrus sinensis orange1.1g020210m.g N 0.864
GLYMA14G35560 Glycine max GLYMA14G35560 N 0.864
ONIVA09G13890 Oryza nivara ONIVA09G13890 N 0.864
orange1.1g043618m.g Citrus sinensis orange1.1g043618m.g N 0.864
LPERR09G09700 Leersia perrieri LPERR09G09700 N 0.864
MLOC_21759 Hordeum vulgare MLOC_21759 N 0.864
GRMZM2G082586 Zea mays GRMZM2G082586 N 0.864
Lus10015902.g Linum usitatissimum Lus10015902.g N 0.864
Gorai.005G094800 Gossypium raimondii Gorai.005G094800 N 0.864
Pavir.Bb02386 Panicum virgatum Pavir.Bb02386 N 0.864
Ciclev10001811m.g Citrus clementina Ciclev10001811m.g N 0.864
Ciclev10026131m.g Citrus clementina Ciclev10026131m.g N 0.864
OMERI09G10430 Oryza meridionalis OMERI09G10430 N 0.864
Bra037414 Brassica rapa Bra037414 N 0.864
Cagra.4006s0007 Capsella grandiflora Cagra.4006s0007 N 0.864
Eucgr.B00048 Eucalyptus grandis Eucgr.B00048 N 0.864
SapurV1A.0613s0120 Salix purpurea SapurV1A.0613s0120 N 0.864
Pavir.J22933 Panicum virgatum Pavir.J22933 N 0.864
evm.TU.supercontig_36.191 Carica papaya evm.TU.supercontig_36.191 N 0.864
Eucgr.H04738 Eucalyptus grandis Eucgr.H04738 N 0.864
GSMUA_Achr2G06030_001 Musa acuminata GSMUA_Achr2G06030_001 N 0.861
GSMUA_Achr11G23340_001 Musa acuminata GSMUA_Achr11G23340_001 N 0.861
PK21055.1 Cannabis sativa PK21055.1 N 0.861
GSMUA_Achr11G00350_001 Musa acuminata GSMUA_Achr11G00350_001 N 0.861
GSMUA_Achr8G28400_001 Musa acuminata GSMUA_Achr8G28400_001 N 0.861
VIT_15s0048g02510 Vitis vinifera VIT_15s0048g02510 N 0.861
VIT_07s0191g00240 Vitis vinifera VIT_07s0191g00240 N 0.861
bHLH071 Vitis vinifera VIT_02s0012g01450 N 0.861
Pm028748 Prunus mume Pm028748 N 0.861
Eucgr.H02788 Eucalyptus grandis Eucgr.H02788 N 0.861
PRUPE_ppa006041mg Prunus persica PRUPE_ppa006041mg N 0.861
cassava39415.m1 Manihot esculenta cassava39415.m1 N 0.861
MTR_8g024210 Medicago truncatula MTR_8g024210 N 0.861
MDP0000829998 Malus domestica MDP0000829998 N 0.861
GRMZM2G006631 Zea mays GRMZM2G006631 N 0.861
MDP0000321049 Malus domestica MDP0000321049 N 0.861
Pavir.J04021 Panicum virgatum Pavir.J04021 N 0.858
Gorai.003G041800 Gossypium raimondii Gorai.003G041800 N 0.858
Traes_4BL_A48C29364 Triticum aestivum Traes_4BL_A48C29364 N 0.858
Traes_4AL_EE88645E2 Triticum aestivum Traes_4AL_EE88645E2 N 0.858
Gorai.007G294800 Gossypium raimondii Gorai.007G294800 N 0.858
Traes_6DL_882BC1812 Triticum aestivum Traes_6DL_882BC1812 N 0.858
Pavir.J03740 Panicum virgatum Pavir.J03740 N 0.858
Traes_4DL_A76BE77E4 Triticum aestivum Traes_4DL_A76BE77E4 N 0.858
Pavir.Ab02502 Panicum virgatum Pavir.Ab02502 N 0.858
ORGLA05G0238800 Oryza glaberrima ORGLA05G0238800 N 0.858
MLOC_67091 Hordeum vulgare MLOC_67091 N 0.858
MLOC_67417 Hordeum vulgare MLOC_67417 N 0.858
OB02G35790 Oryza brachyantha OB02G35790 N 0.858
MLOC_60291 Hordeum vulgare MLOC_60291 N 0.858
MLOC_45114 Hordeum vulgare MLOC_45114 N 0.858
LPERR05G23220 Leersia perrieri LPERR05G23220 N 0.858
MLOC_10595 Hordeum vulgare MLOC_10595 N 0.858
OB04G30380 Oryza brachyantha OB04G30380 N 0.858
OB05G34990 Oryza brachyantha OB05G34990 N 0.858
OGLUM03G06480 Oryza glumaepatula OGLUM03G06480 N 0.858
OGLUM04G23410 Oryza glumaepatula OGLUM04G23410 N 0.858
OBART05G27490 Oryza barthii OBART05G27490 N 0.858
OBART04G23490 Oryza barthii OBART04G23490 N 0.858
OBART02G28630 Oryza barthii OBART02G28630 N 0.858
Traes_2BL_E58521BDF Triticum aestivum Traes_2BL_E58521BDF N 0.858
LPERR04G19210 Leersia perrieri LPERR04G19210 N 0.858
LPERR03G05820 Leersia perrieri LPERR03G05820 N 0.858
BRADI2G22810 Brachypodium distachyon BRADI2G22810 N 0.858
BRADI3G52150 Brachypodium distachyon BRADI3G52150 N 0.858
BRADI5G19950 Brachypodium distachyon BRADI5G19950 N 0.858
BGIOSGA017471 Oryza indica BGIOSGA017471 N 0.858
BGIOSGA017025 Oryza indica BGIOSGA017025 N 0.858
BGIOSGA008846 Oryza indica BGIOSGA008846 N 0.858
BGIOSGA012015 Oryza indica BGIOSGA012015 N 0.858
F775_03517 Aegilops tauschii F775_03517 N 0.858
F775_11253 Aegilops tauschii F775_11253 N 0.858
GSMUA_Achr6G10290_001 Musa acuminata GSMUA_Achr6G10290_001 N 0.858
LPERR02G23260 Leersia perrieri LPERR02G23260 N 0.858
GSMUA_Achr2G22310_001 Musa acuminata GSMUA_Achr2G22310_001 N 0.858
GRMZM2G162450 Zea mays GRMZM2G162450 N 0.858
GRMZM2G091003 Zea mays GRMZM2G091003 N 0.858
GRMZM2G111146 Zea mays GRMZM2G111146 N 0.858
OGLUM05G29000 Oryza glumaepatula OGLUM05G29000 N 0.858
OBART03G06470 Oryza barthii OBART03G06470 N 0.858
ORUFI05G29450 Oryza rufipogon ORUFI05G29450 N 0.858
OLONG_001045 Oryza longistaminata OLONG_001045 N 0.858
ORUFI04G25160 Oryza rufipogon ORUFI04G25160 N 0.858
ORUFI03G06370 Oryza rufipogon ORUFI03G06370 N 0.858
ORGLA04G0200200 Oryza glaberrima ORGLA04G0200200 N 0.858
ORUFI02G30170 Oryza rufipogon ORUFI02G30170 N 0.858
OS03G0188400 Oryza sativa OS03G0188400 N 0.858
OS05G0586300 Oryza sativa OS05G0586300 N 0.858
Si021834m.g Setaria italica Si021834m.g N 0.858
TCM_001031 Theobroma cacao TCM_001031 N 0.858
Si017715m.g Setaria italica Si017715m.g N 0.858
Sb09g030060 Sorghum bicolor Sb09g030060 N 0.858
Sb04g031250 Sorghum bicolor Sb04g031250 N 0.858
ORGLA03G0062600 Oryza glaberrima ORGLA03G0062600 N 0.858
OS02G0691500 Oryza sativa OS02G0691500 N 0.858
ONIVA04G22720 Oryza nivara ONIVA04G22720 N 0.858
ONIVA05G29540 Oryza nivara ONIVA05G29540 N 0.858
OMERI03G06350 Oryza meridionalis OMERI03G06350 N 0.858
ONIVA04G03690 Oryza nivara ONIVA04G03690 N 0.858
OMERI05G23490 Oryza meridionalis OMERI05G23490 N 0.858
ONIVA02G06380 Oryza nivara ONIVA02G06380 N 0.858
OPUNC02G26270 Oryza punctata OPUNC02G26270 N 0.858
ORGLA02G0246400 Oryza glaberrima ORGLA02G0246400 N 0.858
OMERI03G01350 Oryza meridionalis OMERI03G01350 N 0.858
OLONG_028191 Oryza longistaminata OLONG_028191 N 0.858
OPUNC05G25080 Oryza punctata OPUNC05G25080 N 0.858
OPUNC04G21010 Oryza punctata OPUNC04G21010 N 0.858
Si007984m.g Setaria italica Si007984m.g N 0.857
SapurV1A.0003s0430 Salix purpurea SapurV1A.0003s0430 N 0.856
POPTR_0002s18100 Populus trichocarpa POPTR_0002s18100 N 0.856
MDP0000229007 Malus domestica MDP0000229007 N 0.854
Ca_28086 Cicer arietinum Ca_28086 N 0.852
mgf017530m Mimulus guttatus mgf017530m N 0.851
Bo9g055890 Brassica oleracea Bo9g055890 N 0.845
Pavir.Ga00771 Panicum virgatum Pavir.Ga00771 N 0.845
Si010485m.g Setaria italica Si010485m.g N 0.845
Bra027958 Brassica rapa Bra027958 N 0.845
GRMZM2G086474 Zea mays GRMZM2G086474 N 0.845
Pavir.J15346 Panicum virgatum Pavir.J15346 N 0.845
POPTR_0014s10190 Populus trichocarpa POPTR_0014s10190 N 0.844
SapurV1A.0162s0340 Salix purpurea SapurV1A.0162s0340 N 0.844
Thhalv10004772m.g Eutrema salsugineum Thhalv10004772m.g N 0.844
MTR_5g064950 Medicago truncatula MTR_5g064950 N 0.840
Bo6g114730 Brassica oleracea Bo6g114730 N 0.840
GRMZM2G015666 Zea mays GRMZM2G015666 N 0.840