CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.008G282300
(
Gossypium raimondii
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Gorai.008G282300
T050055_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT4G25400
M09786_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT4G25400_01
0.854
0.615
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.008G282300.1
bHLH
60
112
KKLMHRDVERQRRQEMATLYASLRNLLPLEYTKGKRAISDHMNGTVMYIKYLQ
Links
Other
bHLH
family TFs
Other
Gossypium raimondii
TFs
17 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.006G196500
Gossypium raimondii
Gorai.006G196500
I
0.886
cassava45968.m1
Manihot esculenta
cassava45968.m1
I
0.865
AT4G25400
Arabidopsis thaliana
AT4G25400
D
0.854
Bostr.7867s0349
Boechera stricta
Bostr.7867s0349
I
0.854
Carubv10027166m.g
Capsella rubella
Carubv10027166m.g
I
0.852
Cagra.0277s0021
Capsella grandiflora
Cagra.0277s0021
I
0.852
Bostr.15774s0324
Boechera stricta
Bostr.15774s0324
I
0.852
cassava43207.valid.m1
Manihot esculenta
cassava43207.valid.m1
I
0.852
POPTR_0012s14080
Populus trichocarpa
POPTR_0012s14080
I
0.852
TCM_016133
Theobroma cacao
TCM_016133
I
0.852
TCM_016134
Theobroma cacao
TCM_016134
I
0.852
Eucgr.F04119
Eucalyptus grandis
Eucgr.F04119
I
0.851
evm.TU.supercontig_4.181
Carica papaya
evm.TU.supercontig_4.181
I
0.850
LjSGA_023375.1
Lotus japonicus
LjSGA_023375.1
I
0.841
Solyc06g035490.2
Solanum lycopersicum
Solyc06g035490.2
I
0.841
Pm019419
Prunus mume
Pm019419
I
0.841
gene32346-v1.0-hybrid
Fragaria vesca
gene32346-v1.0-hybrid
N
0.841