12538_YJR060W (Saccharomyces paradoxus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 12538_YJR060W T051974_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CBF1
M00374_2.00 		Saccharomyces cerevisiae
NCACGTGAY
RTCACGTGN		 PBM
Berger et al.(2006)
Cbf1 		0.893 0.980
CBF1
M01520_2.00 		Saccharomyces cerevisiae
CACGTGAYH
DRTCACGTG		 PBM
Zhu et al.(2009)
Cbf1 		0.893 0.980
CBF1
M07440_2.00 		Saccharomyces cerevisiae
TCACGTGH
DCACGTGA		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0281.1 		0.893 0.980
CBF1
M08485_2.00 		Saccharomyces cerevisiae
NCAYRTGN
NCAYRTGN		 Misc
DeBoer et al.(2011)
YJR060W_1347 		0.893 0.980
CBF1
M09483_2.00 		Saccharomyces cerevisiae
KCACGTGAYN
NRTCACGTGM		 Misc
Heinz et al.(2010)
Yeast-Cbf1_GSE29506 		0.893 0.980
CBF1
M09897_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$CBF1_02 		0.893 0.980
CBF1
M09898_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$CBF1_03 		0.893 0.980
CBF1
M09899_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$CBF1_04 		0.893 0.980
CBF1
M09900_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$CBF1_B 		0.893 0.980
CBF1
M09901_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$CBF1_Q6 		0.893 0.980
CBF1
M00010_2.00 		Saccharomyces cerevisiae
NDCACGTGANN
NNTCACGTGHN		 PBM
Badis et al.(2008)
CBF1_2160 		0.882 0.959
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
12538_YJR060W bHLH 221 269

Links

Other bHLH family TFs
Other Saccharomyces paradoxus TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SKUD_191104 Saccharomyces kudriavzevii SKUD_191104 I 0.914
12421_YJR060W Saccharomyces mikatae 12421_YJR060W I 0.914
13072_YJR060W Saccharomyces bayanus 13072_YJR060W I 0.914
SAKL0D12650g Lachancea kluyveri SAKL0D12650g I 0.914
Kpol_1054p48 Vanderwaltozyma polyspora Kpol_1054p48 I 0.894
TBLA_0D03730 Tetrapisispora blattae TBLA_0D03730 I 0.894
CBF1 Saccharomyces cerevisiae YJR060W D 0.893
TDEL_0F00520 Torulaspora delbrueckii TDEL_0F00520 I 0.888
TPHA_0F03530 Tetrapisispora phaffii TPHA_0F03530 I 0.888
KLTH0C02640g Lachancea thermotolerans KLTH0C02640g I 0.888
ZBAI_06241 Zygosaccharomyces bailii ZBAI_06241 I 0.888
ZYRO0G04466g Zygosaccharomyces rouxii ZYRO0G04466g I 0.888
KLTH0C02640g Kluyveromyces thermotolerans KLTH0C02640g I 0.888
ZBAI_00952 Zygosaccharomyces bailii ZBAI_00952 I 0.888
Kwal_9999 Kluyveromyces waltii Kwal_9999 I 0.888
KAFR_0D03630 Kazachstania africana KAFR_0D03630 I 0.884
KNAG_0B00250 Kazachstania naganishii KNAG_0B00250 I 0.882
Ecym_3159 Eremothecium cymbalariae Ecym_3159 I 0.877
AGOS_AFR414W Ashbya gossypii AGOS_AFR414W I 0.877
AACERI_AaceriAFR414W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFR414W I 0.877
LALA0_S07e03906g Lachancea lanzarotensis LALA0_S07e03906g I 0.864
NCAS_0A12210 Naumovozyma castellii NCAS_0A12210 I 0.860
Scas_Contig673.33 Saccharomyces castellii Scas_Contig673.33 I 0.860
NDAI_0A04030 Naumovozyma dairenensis NDAI_0A04030 N 0.857
KLLA0_B13761g Kluyveromyces lactis KLLA0_B13761g N 0.845