CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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zeb1a
(
Danio rerio
)
C2H2 ZF,Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF00046 (Homeobox)
IPR007087
IPR001356
ENSDARG00000016788
T075815_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Zeb1
M05844_2.00
Mus musculus
NYACCTGN
NCAGGTRN
SMiLE-seq
Isakova et al.(2017)
ZEB1
0.778
0.778
ZEB1
M08080_2.00
Homo sapiens
NNCACCTGBNN
NNVCAGGTGNN
ChIP-seq
Mathelier et al.(2014)
MA0103.3
0.778
0.778
ZEB1
M07842_2.00
Homo sapiens
YNCACCTG
CAGGTGNR
ChIP-seq
Gerstein et al.(2012)
GM12878_ZEB1_HudsonAlpha
0.778
0.778
ZEB1
M08190_2.00
Homo sapiens
CVCWCACCTG
CAGGTGWGBG
ChIP-seq
Contrino et al.(2012)
Mv136
0.778
0.778
ZEB1
M08848_2.00
Homo sapiens
YHYACCTGBV
BVCAGGTRDR
Misc
Kulakovskiy et al.(2013)
ZEB1_HUMAN.H11MO.0.A
0.778
0.778
Zeb1
M08849_2.00
Mus musculus
YHYACCTGBV
BVCAGGTRDR
Misc
Kulakovskiy et al.(2013)
ZEB1_MOUSE.H11MO.0.B
0.778
0.778
ZEB1
M10089_2.00
Homo sapiens
NHYDYACCTGWVY
RBWCAGGTRHRDN
Transfac
Matys et al.(2006)
V$AREB6_01
0.778
0.778
ZEB1
M10090_2.00
Homo sapiens
WHWCACCTKWNN
NNWMAGGTGWDW
Transfac
Matys et al.(2006)
V$AREB6_02
0.778
0.778
ZEB1
M10091_2.00
Homo sapiens
VBRCACCTGKDV
BHMCAGGTGYVB
Transfac
Matys et al.(2006)
V$AREB6_03
0.778
0.778
ZEB1
M10092_2.00
Homo sapiens
NNSAAACVB
VBGTTTSNN
Transfac
Matys et al.(2006)
V$AREB6_04
0.778
0.778
ZEB1
M10093_2.00
Homo sapiens
NHNCACCTDRV
BYHAGGTGNDN
Transfac
Matys et al.(2006)
V$DELTAEF1_01
0.778
0.778
ZEB1
M10094_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZEB1_03
0.778
0.778
ZEB1
M10095_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZEB_Q3
0.778
0.778
ZEB2
M10096_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIP1_Q6
0.729
0.729
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000024857
C2H2 ZF
132
155
HNCPHCSRGYKRHTSLKEHIKLRH
ENSDARP00000024857
C2H2 ZF
162
184
YCCSLCSYTFTYRTQLVRHMTAH
ENSDARP00000024857
C2H2 ZF
201
223
FKCTECSKAFKYKHHLKEHLRIH
ENSDARP00000024857
C2H2 ZF
229
250
YECPNCRKRFSHSGSYSSHISS
ENSDARP00000024857
Homeodomain
706
753
AAERLLPLLKAYSQNPEPTEEQLAQVAKTVKLPLAAVTKWYEKMRSKR
ENSDARP00000024857
C2H2 ZF
985
1007
YACDLCDKIFQKSSSLLRHKYEH
ENSDARP00000024857
C2H2 ZF
1013
1035
HECSICNKAFKHKHHLIEHTRLH
ENSDARP00000024857
C2H2 ZF
1041
1062
YQCDKCGKRFSHSGSYSQHMNH
ENSDARP00000114082
C2H2 ZF
146
169
HNCPHCSRGYKRHTSLKEHIKLRH
ENSDARP00000114082
C2H2 ZF
176
198
YCCSLCSYTFTYRTQLVRHMTAH
ENSDARP00000114082
C2H2 ZF
215
237
FKCTECSKAFKYKHHLKEHLRIH
ENSDARP00000114082
C2H2 ZF
243
264
YECPNCRKRFSHSGSYSSHISS
ENSDARP00000114082
Homeodomain
720
767
AAERLLPLLKAYSQNPEPTEEQLAQVAKTVKLPLAAVTKWYEKMRSKR
ENSDARP00000114082
C2H2 ZF
999
1021
YACDLCDKIFQKSSSLLRHKYEH
ENSDARP00000114082
C2H2 ZF
1027
1049
HECSICNKAFKHKHHLIEHTRLH
ENSDARP00000114082
C2H2 ZF
1055
1076
YQCDKCGKRFSHSGSYSQHMNH
ENSDARP00000120561
C2H2 ZF
132
155
HNCPHCSRGYKRHTSLKEHIKLRH
ENSDARP00000120561
C2H2 ZF
162
184
YCCSLCSYTFTYRTQLVRHMTAH
Links
Other
C2H2 ZF,Homeodomain
family TFs
Other
Danio rerio
TFs
113 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy