Gfo_R014876 (Geospiza fortis)
C2H2 ZF,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2)
PF00046 (Homeobox)
IPR007087
IPR001356
Gfo_R014876 T076244_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZEB1
M08080_2.00
Homo sapiens
NNCACCTGBNN

NNVCAGGTGNN
ChIP-seq
Mathelier et al.(2014)
MA0103.3
0.990 0.990
ZEB1
M07842_2.00
Homo sapiens
YNCACCTG

CAGGTGNR
ChIP-seq
Gerstein et al.(2012)
GM12878_ZEB1_HudsonAlpha
0.990 0.990
ZEB1
M08190_2.00
Homo sapiens
CVCWCACCTG

CAGGTGWGBG
ChIP-seq
Contrino et al.(2012)
Mv136
0.990 0.990
ZEB1
M08848_2.00
Homo sapiens
YHYACCTGBV

BVCAGGTRDR
Misc
Kulakovskiy et al.(2013)
ZEB1_HUMAN.H11MO.0.A
0.990 0.990
ZEB1
M10089_2.00
Homo sapiens
NHYDYACCTGWVY

RBWCAGGTRHRDN
Transfac
Matys et al.(2006)
V$AREB6_01
0.990 0.990
ZEB1
M10090_2.00
Homo sapiens
WHWCACCTKWNN

NNWMAGGTGWDW
Transfac
Matys et al.(2006)
V$AREB6_02
0.990 0.990
ZEB1
M10091_2.00
Homo sapiens
VBRCACCTGKDV

BHMCAGGTGYVB
Transfac
Matys et al.(2006)
V$AREB6_03
0.990 0.990
ZEB1
M10092_2.00
Homo sapiens
NNSAAACVB

VBGTTTSNN
Transfac
Matys et al.(2006)
V$AREB6_04
0.990 0.990
ZEB1
M10093_2.00
Homo sapiens
NHNCACCTDRV

BYHAGGTGNDN
Transfac
Matys et al.(2006)
V$DELTAEF1_01
0.990 0.990
ZEB1
M10094_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZEB1_03
0.990 0.990
ZEB1
M10095_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZEB_Q3
0.990 0.990
Zeb1
M05844_2.00
Mus musculus
NYACCTGN

NCAGGTRN
SMiLE-seq
Isakova et al.(2017)
ZEB1
0.981 0.981
Zeb1
M08849_2.00
Mus musculus
YHYACCTGBV

BVCAGGTRDR
Misc
Kulakovskiy et al.(2013)
ZEB1_MOUSE.H11MO.0.B
0.981 0.981
ZEB2
M10096_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIP1_Q6
0.827 0.827
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R014876 C2H2 ZF 152 175
Gfo_R014876 C2H2 ZF 182 204
Gfo_R014876 C2H2 ZF 222 244
Gfo_R014876 C2H2 ZF 250 271
Gfo_R014876 Homeodomain 568 616
Gfo_R014876 C2H2 ZF 886 908
Gfo_R014876 C2H2 ZF 914 936
Gfo_R014876 C2H2 ZF 942 963

Links

Other C2H2 ZF,Homeodomain family TFs
Other Geospiza fortis TFs

125 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000009337 Ailuropoda melanoleuca ENSAMEG00000009337 I 0.827
ENSAMEG00000010224 Ailuropoda melanoleuca ENSAMEG00000010224 I 0.990
Alligator_sinensis_CCG010397.1 Alligator sinensis Alligator_sinensis_CCG010397.1 I 0.990
Alligator_sinensis_CCG017701.1 Alligator sinensis Alligator_sinensis_CCG017701.1 I 0.827
ENSAPLG00000007687 Anas platyrhynchos ENSAPLG00000007687 I 0.827
ENSAPLG00000007482 Anas platyrhynchos ENSAPLG00000007482 I 0.995
ZEB2 Anolis carolinensis ENSACAG00000023811 I 0.812
ZEB1 Anolis carolinensis ENSACAG00000007353 I 0.971
Afo_R000542 Aptenodytes forsteri Afo_R000542 I 0.822
Afo_R009258 Aptenodytes forsteri Afo_R009258 I 0.995
ENSAMXG00000010069 Astyanax mexicanus ENSAMXG00000010069 I 0.806
ENSBTAP00000053646-D1 Bos grunniens ENSBTAP00000053646-D1 I 0.827
ZEB1 Bos taurus ENSBTAG00000020053 I 0.990
ZEB2 Bos taurus ENSBTAG00000012615 I 0.827
Brh_R003547 Buceros rhinoceros Brh_R003547 I 0.822
ZEB1 Callithrix jacchus ENSCJAG00000013332 I 0.990
ZEB2 Callithrix jacchus ENSCJAG00000012457 I 0.827
Aan_R003058 Calypte anna Aan_R003058 I 0.822
Aan_R013683 Calypte anna Aan_R013683 I 0.995
ZEB2 Canis familiaris ENSCAFG00000005497 I 0.827
ZEB1 Canis familiaris ENSCAFG00000004023 I 0.990
ZEB1 Cavia porcellus ENSCPOG00000007682 I 0.865
ZEB2 Cavia porcellus ENSCPOG00000004182 I 0.827
Cmyd_10008652 Chelonia mydas Cmyd_10008652 I 0.990
Cmyd_10013008 Chelonia mydas Cmyd_10013008 I 0.818
ENSCSAG00000016197 Chlorocebus sabaeus ENSCSAG00000016197 I 0.827
ENSCSAG00000011628 Chlorocebus sabaeus ENSCSAG00000011628 I 0.990
ZEB2 Choloepus hoffmanni ENSCHOG00000001435 I 0.827
zeb1a Danio rerio ENSDARG00000016788 I 0.774
zeb1b Danio rerio ENSDARG00000013207 I 0.909
ZEB2 Dasypus novemcinctus ENSDNOG00000039558 I 0.827
ZEB1 Dasypus novemcinctus ENSDNOG00000016748 I 0.990
Zeb1 Dipodomys ordii ENSDORG00000007230 I 0.990
ZEB1 Equus caballus ENSECAG00000020102 I 0.774
ZEB2 Equus caballus ENSECAG00000019355 I 0.827
ZEB1 Erinaceus europaeus ENSEEUG00000006386 I 0.760
ZEB2 Felis catus ENSFCAG00000015532 I 0.827
ZEB1 Felis catus ENSFCAG00000010440 I 0.990
ENSFALG00000007118 Ficedula albicollis ENSFALG00000007118 I 1.000
ENSFALG00000013846 Ficedula albicollis ENSFALG00000013846 I 0.822
ENSGMOG00000010266 Gadus morhua ENSGMOG00000010266 I 0.788
ENSGALG00000012440 Gallus gallus ENSGALG00000012440 I 0.827
ZEB1 Gallus gallus ENSGALG00000007260 I 0.995
zeb1b Gasterosteus aculeatus ENSGACG00000001002 I 0.832
zeb1a Gasterosteus aculeatus ENSGACG00000017648 I 0.774
Gfo_R001123 Geospiza fortis Gfo_R001123 I 0.822
ZEB2 Gorilla gorilla ENSGGOG00000003186 I 0.827
ZEB1 Gorilla gorilla ENSGGOG00000010090 I 0.990
ZEB2 Homo sapiens ENSG00000169554 D 0.827
ZEB1 Homo sapiens ENSG00000148516 D 0.990
ENSSTOG00000003811 Ictidomys tridecemlineatus ENSSTOG00000003811 I 0.827
ENSSTOG00000016404 Ictidomys tridecemlineatus ENSSTOG00000016404 I 0.990
ENSLACG00000013253 Latimeria chalumnae ENSLACG00000013253 I 0.981
ENSLOCG00000007239 Lepisosteus oculatus ENSLOCG00000007239 I 0.947
ZEB2 Loxodonta africana ENSLAFG00000008960 I 0.827
ZEB1 Loxodonta africana ENSLAFG00000009663 I 0.990
ENSP00000386854 Macaca fascicularis ENSP00000386854 I 0.827
ENSP00000319248 Macaca fascicularis ENSP00000319248 I 0.990
ZEB1 Macaca mulatta ENSMMUG00000015453 I 0.990
ZEB2 Macaca mulatta ENSMMUG00000016845 I 0.827
ZEB2 Meleagris gallopavo ENSMGAG00000012628 I 0.827
ZEB1 Meleagris gallopavo ENSMGAG00000006355 I 0.990
ZEB2 Monodelphis domestica ENSMODG00000003112 I 0.827
ZEB1 Monodelphis domestica ENSMODG00000007847 I 0.990
ENSMPUG00000003620 Mustela putorius furo ENSMPUG00000003620 I 0.827
ENSMPUG00000013033 Mustela putorius furo ENSMPUG00000013033 I 0.990
Zeb1 Mus musculus ENSMUSG00000024238 D 0.981
Zeb2 Mus musculus ENSMUSG00000026872 I 0.827
Myotis_brandtii_ZEB1_10033015 Myotis brandtii Myotis_brandtii_ZEB1_10033015 I 0.986
Myotis_brandtii_ZEB2_10007070 Myotis brandtii Myotis_brandtii_ZEB2_10007070 I 0.827
ZEB1 Myotis lucifugus ENSMLUG00000010631 I 0.865
ZEB2 Myotis lucifugus ENSMLUG00000002019 I 0.827
ENSNLEG00000018130 Nomascus leucogenys ENSNLEG00000018130 I 0.990
ENSNLEG00000009020 Nomascus leucogenys ENSNLEG00000009020 I 0.827
ZEB2 Ochotona princeps ENSOPRG00000006205 I 0.827
Ogr14261 Ophisaurus gracilis Ogr14261 I 0.812
ENSONIG00000015066 Oreochromis niloticus ENSONIG00000015066 I 0.819
ENSONIG00000003766 Oreochromis niloticus ENSONIG00000003766 I 0.882
ZEB1 Oryctolagus cuniculus ENSOCUG00000006516 I 0.774
ZEB2 Oryctolagus cuniculus ENSOCUG00000027880 I 0.827
zeb1b Oryzias latipes ENSORLG00000004296 I 0.865
ZEB2 Otolemur garnettii ENSOGAG00000010020 I 0.827
ZEB1 Otolemur garnettii ENSOGAG00000008365 I 0.990
ENSOARG00000013971 Ovis aries ENSOARG00000013971 I 0.779
ZEB2 Pan troglodytes ENSPTRG00000012513 I 0.827
ZEB1 Pan troglodytes ENSPTRG00000002404 I 0.990
ENSPANG00000008399 Papio anubis ENSPANG00000008399 I 0.827
ENSPANG00000022899 Papio anubis ENSPANG00000022899 I 0.990
ENSPSIG00000016788 Pelodiscus sinensis ENSPSIG00000016788 I 0.822
ENSPSIG00000009469 Pelodiscus sinensis ENSPSIG00000009469 I 0.990
ENSPFOG00000014086 Poecilia formosa ENSPFOG00000014086 I 0.819
ENSPFOG00000014121 Poecilia formosa ENSPFOG00000014121 I 0.803
ENSPFOG00000016296 Poecilia formosa ENSPFOG00000016296 I 0.769
ENSPFOG00000013823 Poecilia formosa ENSPFOG00000013823 I 0.865
Pvit_04101 Pogona vitticeps Pvit_04101 I 0.760
Pvit_13221 Pogona vitticeps Pvit_13221 I 0.812
ENSPPYG00000012831 Pongo abelii ENSPPYG00000012831 I 0.827
ENSPPYG00000002189 Pongo abelii ENSPPYG00000002189 I 0.990
ZEB1 Procavia capensis ENSPCAG00000004425 I 0.774
ZEB1 Pteropus vampyrus ENSPVAG00000010088 I 0.990
ZEB2 Pteropus vampyrus ENSPVAG00000015557 I 0.731
Zeb1 Rattus norvegicus ENSRNOG00000017863 I 0.981
Zeb2 Rattus norvegicus ENSRNOG00000004677 I 0.827
ENSSHAG00000005352 Sarcophilus harrisii ENSSHAG00000005352 I 0.976
ENSSHAG00000016692 Sarcophilus harrisii ENSSHAG00000016692 I 0.827
ZEB1 Sorex araneus ENSSARG00000010985 I 0.990
ZEB1 Taeniopygia guttata ENSTGUG00000001020 I 0.990
ZEB2 Taeniopygia guttata ENSTGUG00000011904 I 0.822
zeb1b Takifugu rubripes ENSTRUG00000001422 I 0.808
ENSTSYG00000009177 Tarsius syrichta ENSTSYG00000009177 I 0.736
zeb1a Tetraodon nigroviridis ENSTNIG00000007962 I 0.808
ZEB1 Tursiops truncatus ENSTTRG00000011798 I 0.769
ZEB2 Tursiops truncatus ENSTTRG00000006478 I 0.827
Tal_R009077 Tyto alba Tal_R009077 I 0.995
ZEB2 Vicugna pacos ENSVPAG00000002128 I 0.827
zeb2.S Xenopus laevis XB-GENE-865280 I 0.817
ABC48601 Xenopus laevis ABC48601 I 0.962
zeb1.S Xenopus laevis XB-GENE-865109 I 0.962
XP_002936766 Xenopus tropicalis XP_002936766 I 0.827
XP_002936763 Xenopus tropicalis XP_002936763 I 0.827
zeb1 Xenopus tropicalis XB-GENE-484655 I 0.966
zeb2 Xenopus tropicalis XB-GENE-479558 I 0.827
ENSXMAG00000002123 Xiphophorus maculatus ENSXMAG00000002123 I 0.756
ENSXMAG00000006005 Xiphophorus maculatus ENSXMAG00000006005 I 0.819
ENSXMAG00000005475 Xiphophorus maculatus ENSXMAG00000005475 I 0.851