Gfo_R014876 (Geospiza fortis)
C2H2 ZF,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2)
PF00046 (Homeobox)
IPR007087
IPR001356
Gfo_R014876 T076244_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZEB1
M08080_2.00
Homo sapiens
NNCACCTGBNN

NNVCAGGTGNN
ChIP-seq
Mathelier et al.(2014)
MA0103.3
0.990 0.990
ZEB1
M07842_2.00
Homo sapiens
YNCACCTG

CAGGTGNR
ChIP-seq
Gerstein et al.(2012)
GM12878_ZEB1_HudsonAlpha
0.990 0.990
ZEB1
M08190_2.00
Homo sapiens
CVCWCACCTG

CAGGTGWGBG
ChIP-seq
Contrino et al.(2012)
Mv136
0.990 0.990
ZEB1
M08848_2.00
Homo sapiens
YHYACCTGBV

BVCAGGTRDR
Misc
Kulakovskiy et al.(2013)
ZEB1_HUMAN.H11MO.0.A
0.990 0.990
ZEB1
M10089_2.00
Homo sapiens
NHYDYACCTGWVY

RBWCAGGTRHRDN
Transfac
Matys et al.(2006)
V$AREB6_01
0.990 0.990
ZEB1
M10090_2.00
Homo sapiens
WHWCACCTKWNN

NNWMAGGTGWDW
Transfac
Matys et al.(2006)
V$AREB6_02
0.990 0.990
ZEB1
M10091_2.00
Homo sapiens
VBRCACCTGKDV

BHMCAGGTGYVB
Transfac
Matys et al.(2006)
V$AREB6_03
0.990 0.990
ZEB1
M10092_2.00
Homo sapiens
NNSAAACVB

VBGTTTSNN
Transfac
Matys et al.(2006)
V$AREB6_04
0.990 0.990
ZEB1
M10093_2.00
Homo sapiens
NHNCACCTDRV

BYHAGGTGNDN
Transfac
Matys et al.(2006)
V$DELTAEF1_01
0.990 0.990
ZEB1
M10094_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZEB1_03
0.990 0.990
ZEB1
M10095_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ZEB_Q3
0.990 0.990
Zeb1
M05844_2.00
Mus musculus
NYACCTGN

NCAGGTRN
SMiLE-seq
Isakova et al.(2017)
ZEB1
0.981 0.981
Zeb1
M08849_2.00
Mus musculus
YHYACCTGBV

BVCAGGTRDR
Misc
Kulakovskiy et al.(2013)
ZEB1_MOUSE.H11MO.0.B
0.981 0.981
ZEB2
M10096_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SIP1_Q6
0.827 0.827
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R014876 C2H2 ZF 152 175
Gfo_R014876 C2H2 ZF 182 204
Gfo_R014876 C2H2 ZF 222 244
Gfo_R014876 C2H2 ZF 250 271
Gfo_R014876 Homeodomain 568 616
Gfo_R014876 C2H2 ZF 886 908
Gfo_R014876 C2H2 ZF 914 936
Gfo_R014876 C2H2 ZF 942 963

Links

Other C2H2 ZF,Homeodomain family TFs
Other Geospiza fortis TFs

125 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CaO19.1499 Candida albicans CaO19.1499 N 0.000
CaO19.9075 Candida albicans CaO19.9075 N 0.000
CD36_16710 Candida dubliniensis CD36_16710 N 0.000
PGUG_03166 Candida guilliermondii PGUG_03166 N 0.000
PGUG_03167 Candida guilliermondii PGUG_03167 N 0.000
G210_2898 Candida maltosa G210_2898 N 0.000
CORT_0A09500 Candida orthopsilosis CORT_0A09500 N 0.000
CPAG_03070 Candida parapsilosis CPAG_03070 N 0.000
CANTEDRAFT_100135 Candida tenuis CANTEDRAFT_100135 N 0.000
CTRG_01280 Candida tropicalis CTRG_01280 N 0.000
PV07_10612 Cladophialophora immunda PV07_10612 N 0.000
CLUG_02329 Clavispora lusitaniae CLUG_02329 N 0.000
DEHA2B04070g Debaryomyces hansenii DEHA2B04070g N 0.000
LELG_00946 Lodderomyces elongisporus LELG_00946 N 0.000
PGUG_03166 Meyerozyma guilliermondii PGUG_03166 N 0.000
PGUG_03167 Meyerozyma guilliermondii PGUG_03167 N 0.000
GNLVRS01_PISO0A07920g Millerozyma farinosa GNLVRS01_PISO0A07920g N 0.000
GNLVRS01_PISO0B07987g Millerozyma farinosa GNLVRS01_PISO0B07987g N 0.000
e_gww1.3.1.128.1 Pichia stipitis e_gww1.3.1.128.1 N 0.000
PICST_57681 Scheffersomyces stipitis PICST_57681 N 0.000
SPAPADRAFT_136216 Spathaspora passalidarum SPAPADRAFT_136216 N 0.000