CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZNF550
(
Canis familiaris
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSCAFG00000002421
T088229_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF550
M07772_2.00
Homo sapiens
TGCCYTAGCMBWSRYTYY
RRARYSWVKGCTARGGCA
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF550.RCADE.OriginalMapping
0.817
0.967
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000003515
C2H2 ZF
202
224
YKCKQCGKGFNRKWYLVRHQRVH
ENSCAFP00000003515
C2H2 ZF
230
252
YECNACGKAFSQSSTLIRHYLIH
ENSCAFP00000003515
C2H2 ZF
258
280
YKCMECGKAFKRRSYLMQHHPIH
ENSCAFP00000003515
C2H2 ZF
286
308
YECSQCRKAFTHRSTFIRHNRTH
ENSCAFP00000003515
C2H2 ZF
314
336
FECKECEKSFSNRAHLIQHYIIH
ENSCAFP00000003515
C2H2 ZF
342
364
YDCMECGKAFRCSSELMQHQRIH
ENSCAFP00000003515
C2H2 ZF
370
392
YECAQCGKAFHRSTYLIQHSVIH
ENSCAFP00000003515
C2H2 ZF
398
420
YKCLECGKAFKRRSHLLQHQRVH
Links
Other
C2H2 ZF
family TFs
Other
Canis familiaris
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy