si:ch211-263k4.2 (Gasterosteus aculeatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSGACG00000006600 T095606_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PRDM16
M10223_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_03
0.772 0.921
PRDM16
M10224_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_04
0.772 0.921
PRDM16
M10225_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_05
0.772 0.921
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000008736 C2H2 ZF 88 109
ENSGACP00000008736 C2H2 ZF 137 159
ENSGACP00000008736 C2H2 ZF 165 187
ENSGACP00000008736 C2H2 ZF 193 216
ENSGACP00000008736 C2H2 ZF 222 244
ENSGACP00000008736 C2H2 ZF 250 272
ENSGACP00000008736 C2H2 ZF 279 300
ENSGACP00000008736 C2H2 ZF 849 871
ENSGACP00000008736 C2H2 ZF 877 900
ENSGACP00000008736 C2H2 ZF 906 928

Links

Other C2H2 ZF family TFs
Other Gasterosteus aculeatus TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Alligator_sinensis_CCG011602.1 Alligator sinensis Alligator_sinensis_CCG011602.1 I 0.774
ENSAPLG00000005898 Anas platyrhynchos ENSAPLG00000005898 I 0.774
Afo_R003306 Aptenodytes forsteri Afo_R003306 I 0.774
ENSAMXG00000014024 Astyanax mexicanus ENSAMXG00000014024 I 0.805
ENSP00000417899-D2 Bos grunniens ENSP00000417899-D2 I 0.774
PRDM16 Bos taurus ENSBTAG00000018965 I 0.774
Brh_R007819 Buceros rhinoceros Brh_R007819 I 0.774
Aan_R005955 Calypte anna Aan_R005955 I 0.796
PRDM16 Canis familiaris ENSCAFG00000019473 I 0.769
PRDM16 Danio rerio ENSDARG00000078324 I 0.810
PRDM16 Equus caballus ENSECAG00000017045 I 0.776
ENSFALG00000009580 Ficedula albicollis ENSFALG00000009580 I 0.796
ENSGMOG00000015664 Gadus morhua ENSGMOG00000015664 I 0.816
ENSGALG00000001063 Gallus gallus ENSGALG00000001063 I 0.774
Gfo_R009744 Geospiza fortis Gfo_R009744 I 0.774
PRDM16 Gorilla gorilla ENSGGOG00000003763 I 0.772
PRDM16 Homo sapiens ENSG00000142611 D 0.772
ENSLOCG00000005336 Lepisosteus oculatus ENSLOCG00000005336 I 0.790
PRDM16 Loxodonta africana ENSLAFG00000001071 I 0.774
ENSP00000270722 Macaca fascicularis ENSP00000270722 I 0.772
PRDM16 Macaca mulatta ENSMMUG00000009350 I 0.772
PRDM16 Meleagris gallopavo ENSMGAG00000001857 I 0.774
ENSONIG00000002121 Oreochromis niloticus ENSONIG00000002121 I 0.818
si:ch211-263k4.2 Oryzias latipes ENSORLG00000004492 I 0.822
PRDM16 Otolemur garnettii ENSOGAG00000005055 I 0.776
ENSPSIG00000004093 Pelodiscus sinensis ENSPSIG00000004093 I 0.776
ENSPFOG00000010341 Poecilia formosa ENSPFOG00000010341 I 0.822
ENSPPYG00000001968 Pongo abelii ENSPPYG00000001968 I 0.772
PRDM16 Sus scrofa ENSSSCG00000021490 I 0.780
si:ch211-263k4.2 Takifugu rubripes ENSTRUG00000014772 N 0.800
si:ch211-263k4.2 Tetraodon nigroviridis ENSTNIG00000011975 N 0.800
XP_002938538 Xenopus tropicalis XP_002938538 I 0.775
ENSXMAG00000019072 Xiphophorus maculatus ENSXMAG00000019072 I 0.822