Prdm4 (Mus musculus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMUSG00000035529 T101128_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
This gene encodes a member of the PR/SET family of zinc finger proteins. This protein has been shown to bind DNA in a sequence-specific manner and has been implicated in neural stem cell proliferation and differentiation. Pseudogenes have been identified on chromosomes 14 and X. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2014]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PRDM4
M02881_2.00
Homo sapiens
TTTCAAGGCCCCC

GGGGGCCTTGAAA
SELEX
Jolma et al.(2013)
PRDM4_1
0.827 1.000
PRDM4
M04421_2.00
Homo sapiens
YRRCNGTTTCAAGKCYMCCC

GGGKRGMCTTGAAACNGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX
0.827 1.000
PRDM4
M04422_2.00
Homo sapiens
YRGCRGTTTCRAGGSTTVCC

GGBAASCCTYGAAACYGCYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1
0.827 1.000
PRDM4
M04423_2.00
Homo sapiens
YRRCRGTTTCRAGKSYNCCC

GGGNRSMCTYGAAACYGYYR
SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2
0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000041942 C2H2 ZF 593 615
ENSMUSP00000041942 C2H2 ZF 621 643
ENSMUSP00000041942 C2H2 ZF 649 671
ENSMUSP00000041942 C2H2 ZF 677 699
ENSMUSP00000041942 C2H2 ZF 705 727
ENSMUSP00000041942 C2H2 ZF 733 754

Links

Other C2H2 ZF family TFs
Other Mus musculus TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSP00000228437-D1 Bos grunniens ENSP00000228437-D1 I 0.827
ENSOARG00000017955 Ovis aries ENSOARG00000017955 I 0.827
PRDM4 Otolemur garnettii ENSOGAG00000011945 I 0.827
ENSNLEG00000006748 Nomascus leucogenys ENSNLEG00000006748 I 0.827
ENSMPUG00000012238 Mustela putorius furo ENSMPUG00000012238 I 0.827
PRDM4 Macaca mulatta ENSMMUG00000015550 I 0.827
ENSP00000228437 Macaca fascicularis ENSP00000228437 I 0.827
PRDM4 Ochotona princeps ENSOPRG00000010192 I 0.827
ENSPANG00000022084 Papio anubis ENSPANG00000022084 I 0.827
ENSSTOG00000016168 Ictidomys tridecemlineatus ENSSTOG00000016168 I 0.827
PRDM4 Tursiops truncatus ENSTTRG00000011056 I 0.827
PRDM4 Vicugna pacos ENSVPAG00000002215 I 0.827
PRDM4 Sus scrofa ENSSSCG00000000160 I 0.827
PRDM4 Pan troglodytes ENSPTRG00000005400 I 0.827
PRDM4 Procavia capensis ENSPCAG00000009987 I 0.827
ENSPPYG00000004913 Pongo abelii ENSPPYG00000004913 I 0.827
Myotis_brandtii_PRDM4_10020406 Myotis brandtii Myotis_brandtii_PRDM4_10020406 I 0.827
PRDM4 Myotis lucifugus ENSMLUG00000000767 I 0.827
PRDM4 Loxodonta africana ENSLAFG00000001483 I 0.827
PRDM4 Dasypus novemcinctus ENSDNOG00000032478 I 0.827
PRDM4 Callithrix jacchus ENSCJAG00000015261 I 0.827
PRDM4 Canis familiaris ENSCAFG00000001788 I 0.827
ENSAMEG00000016174 Ailuropoda melanoleuca ENSAMEG00000016174 I 0.827
PRDM4 Bos taurus ENSBTAG00000012999 I 0.827
PRDM4 Equus caballus ENSECAG00000015423 I 0.827
ENSCSAG00000002896 Chlorocebus sabaeus ENSCSAG00000002896 I 0.827
PRDM4 Felis catus ENSFCAG00000022478 I 0.827
PRDM4 Gorilla gorilla ENSGGOG00000001244 I 0.827
PRDM4 Homo sapiens ENSG00000110851 D 0.827
Prdm4 Rattus norvegicus ENSRNOG00000004962 I 0.824
PRDM4 Choloepus hoffmanni ENSCHOG00000001744 I 0.823
ENSCPOG00000022385 Cavia porcellus ENSCPOG00000022385 I 0.822
ENSTGUG00000015149 Taeniopygia guttata ENSTGUG00000015149 I 0.821
ENSAPLG00000009846 Anas platyrhynchos ENSAPLG00000009846 I 0.821
PRDM4 Meleagris gallopavo ENSMGAG00000012815 I 0.821
Afo_R011067 Aptenodytes forsteri Afo_R011067 I 0.821
Aan_R008654 Calypte anna Aan_R008654 I 0.821
ENSTGUG00000010962 Taeniopygia guttata ENSTGUG00000010962 I 0.821
Gfo_R004636 Geospiza fortis Gfo_R004636 I 0.821
PRDM4 Gallus gallus ENSGALG00000012619 I 0.821
Brh_R007685 Buceros rhinoceros Brh_R007685 I 0.821
ENSFALG00000013342 Ficedula albicollis ENSFALG00000013342 I 0.821
Tal_R009708 Tyto alba Tal_R009708 I 0.821
Alligator_sinensis_CCG012513.1 Alligator sinensis Alligator_sinensis_CCG012513.1 I 0.819
PRDM4 Ornithorhynchus anatinus ENSOANG00000005526 I 0.819
ENSMEUG00000004495 Macropus eugenii ENSMEUG00000004495 I 0.819
PRDM4 Monodelphis domestica ENSMODG00000001448 I 0.819
Cmyd_10007196 Chelonia mydas Cmyd_10007196 I 0.817
ENSPSIG00000012066 Pelodiscus sinensis ENSPSIG00000012066 I 0.817
Pvit_09756 Pogona vitticeps Pvit_09756 I 0.817
PRDM4 Anolis carolinensis ENSACAG00000014907 I 0.809
PRDM4 Microcebus murinus ENSMICG00000007807 I 0.802
PRDM4 Erinaceus europaeus ENSEEUG00000006569 I 0.785