CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG006627.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG006627.1
T133177_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Sall1
M10342_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SALL1_04
0.827
1.000
Sall1
M10343_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SALL1_05
0.827
1.000
Sall1
M10344_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SALL1_06
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG006627.1
C2H2 ZF
283
305
HKCRFCAKVFGSDSALQIHLRSH
Alligator_sinensis_CCG006627.1
C2H2 ZF
311
333
FKCNICGNRFSTKGNLKVHFQRH
Alligator_sinensis_CCG006627.1
C2H2 ZF
566
588
FKCKICGRAFTTKGNLKTHYSVH
Alligator_sinensis_CCG006627.1
C2H2 ZF
598
620
HSCPICQKKFTNAVVLQQHIRMH
Alligator_sinensis_CCG006627.1
C2H2 ZF
833
855
TACDICGKTFACQSALDIHYRSH
Alligator_sinensis_CCG006627.1
C2H2 ZF
861
883
FICTVCNRGFSTKGNLKQHMLTH
Alligator_sinensis_CCG006627.1
C2H2 ZF
966
988
HYCNTCGKTFSSSSALQIHERTH
Alligator_sinensis_CCG006627.1
C2H2 ZF
994
1016
FACTICGRAFTTKGNLKVHMGTH
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
50 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy