CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG016283.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG016283.1
T133354_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SNAI2
M00221_2.00
Homo sapiens
HACYTGH
DCARGTD
PBM
Barrera et al.(2016)
SNAI2_REF
0.825
0.991
SNAI2
M02873_2.00
Homo sapiens
VCACCTGYN
NRCAGGTGB
SELEX
Jolma et al.(2013)
SNAI2_1
0.825
0.991
SNAI2
M04392_2.00
Homo sapiens
YGCACCTGYY
RRCAGGTGCR
SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX
0.825
0.991
SNAI2
M04394_2.00
Homo sapiens
YRCACCTGYY
RRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX
0.825
0.991
SNAI2
M08853_2.00
Homo sapiens
NVCACCTGYY
RRCAGGTGBN
Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A
0.825
0.991
Snai2
M08973_2.00
Mus musculus
VNRCACCTGYY
RRCAGGTGYNB
Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A
0.825
0.991
SNAI2
M10102_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SLUG_Q6_01
0.825
0.991
SNAI2
M10103_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SLUG_Q6_02
0.825
0.991
SNAI2
M10104_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SLUG_Q6
0.825
0.991
SNAI2
M00220_2.00
Homo sapiens
NHACCTGY
RCAGGTDN
PBM
Barrera et al.(2016)
SNAI2_D119E
0.825
0.991
SNAI2
M04393_2.00
Homo sapiens
YRCACCTGYN
NRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX
0.825
0.991
SNAI2
M04395_2.00
Homo sapiens
YRCACCTGYN
NRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX
0.825
0.991
SNAI2
M00222_2.00
Homo sapiens
HACYTGHNNN
NNNDCARGTD
PBM
Barrera et al.(2016)
SNAI2_T234I
0.821
0.982
esg
M06050_2.00
Drosophila melanogaster
CACCTGH
DCAGGTG
B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981
0.767
0.816
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG016283.1
C2H2 ZF
128
150
FQCSLCNKTYSTFSGLAKHKQLH
Alligator_sinensis_CCG016283.1
C2H2 ZF
159
181
FSCKYCDKEYVSLGALKMHIRTH
Alligator_sinensis_CCG016283.1
C2H2 ZF
185
207
CVCKICGKAFSRPWLLQGHIRTH
Alligator_sinensis_CCG016283.1
C2H2 ZF
213
235
FSCPHCNRAFADRSNLRAHLQTH
Alligator_sinensis_CCG016283.1
C2H2 ZF
241
262
YQCKNCSKTFSRMSLLHKHEES
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
101 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aan_R012932
Calypte anna
Aan_R012932
I
0.827
Afo_R005870
Aptenodytes forsteri
Afo_R005870
I
0.827
Brh_R006038
Buceros rhinoceros
Brh_R006038
I
0.827
Gfo_R012649
Geospiza fortis
Gfo_R012649
I
0.827
SNAI2
Taeniopygia guttata
ENSTGUG00000010914
I
0.827
SNAI2
Pteropus vampyrus
ENSPVAG00000009457
I
0.827
SNAI2
Monodelphis domestica
ENSMODG00000010173
I
0.827
SNAI2
Ornithorhynchus anatinus
ENSOANG00000007267
I
0.827
ENSPSIG00000016395
Pelodiscus sinensis
ENSPSIG00000016395
I
0.827
Ogr04681
Ophisaurus gracilis
Ogr04681
I
0.827
Pvit_15376
Pogona vitticeps
Pvit_15376
I
0.827
snai2
Xenopus tropicalis
XB-GENE-487371
I
0.827
snai2.L
Xenopus laevis
XB-GENE-6255814
I
0.827
snai2.S
Xenopus laevis
XB-GENE-865699
I
0.827
AAK54139
Xenopus laevis
AAK54139
I
0.827
AAK54137
Xenopus laevis
AAK54137
I
0.827
Tal_R003673
Tyto alba
Tal_R003673
I
0.827
AAB34088
Xenopus laevis
AAB34088
I
0.827
AAK54135
Xenopus tropicalis
AAK54135
I
0.827
SNAI2
Meleagris gallopavo
ENSMGAG00000010813
I
0.827
ENSSHAG00000004205
Sarcophilus harrisii
ENSSHAG00000004205
I
0.827
ENSFALG00000005762
Ficedula albicollis
ENSFALG00000005762
I
0.827
ENSAPLG00000003920
Anas platyrhynchos
ENSAPLG00000003920
I
0.827
SNAI2
Anolis carolinensis
ENSACAG00000012332
I
0.827
ENSPPYG00000018578
Pongo abelii
ENSPPYG00000018578
I
0.825
ENSCPOG00000014827
Cavia porcellus
ENSCPOG00000014827
I
0.825
ENSCSAG00000014787
Chlorocebus sabaeus
ENSCSAG00000014787
I
0.825
SNAI2
Procavia capensis
ENSPCAG00000001788
I
0.825
Myotis_brandtii_Snai2_10018131
Myotis brandtii
Myotis_brandtii_Snai2_10018131
I
0.825
ENSPANG00000017540
Papio anubis
ENSPANG00000017540
I
0.825
SNAI2
Callithrix jacchus
ENSCJAG00000013499
I
0.825
SNAI2
Pan troglodytes
ENSPTRG00000020235
I
0.825
SNAI2
Canis familiaris
ENSCAFG00000006638
I
0.825
SNAI2
Loxodonta africana
ENSLAFG00000009299
I
0.825
SNAI2
Choloepus hoffmanni
ENSCHOG00000007046
I
0.825
Snai2
Rattus norvegicus
ENSRNOG00000047699
I
0.825
SNAI2
Homo sapiens
ENSG00000019549
D
0.825
ENSAMEG00000009606
Ailuropoda melanoleuca
ENSAMEG00000009606
I
0.825
SNAI2
Otolemur garnettii
ENSOGAG00000010500
I
0.825
SNAI2
Myotis lucifugus
ENSMLUG00000001086
I
0.825
SNAI2
Macaca mulatta
ENSMMUG00000016195
I
0.825
SNAI2
Microcebus murinus
ENSMICG00000000335
I
0.825
SNAI2
Dasypus novemcinctus
ENSDNOG00000035997
I
0.825
ENSP00000380034
Macaca fascicularis
ENSP00000380034
I
0.825
SNAI2
Felis catus
ENSFCAG00000015779
I
0.825
SNAI2
Gorilla gorilla
ENSGGOG00000000959
I
0.825
ENSMPUG00000010793
Mustela putorius furo
ENSMPUG00000010793
I
0.825
SNAI2
Equus caballus
ENSECAG00000010120
I
0.825
SNAI2
Oryctolagus cuniculus
ENSOCUG00000012254
I
0.825
ENSGALG00000015241
Gallus gallus
ENSGALG00000015241
I
0.825
ENSNLEG00000013421
Nomascus leucogenys
ENSNLEG00000013421
I
0.825
Snai2
Mus musculus
ENSMUSG00000022676
D
0.825
ENSSTOG00000028743
Ictidomys tridecemlineatus
ENSSTOG00000028743
I
0.825
ENSLACG00000005413
Latimeria chalumnae
ENSLACG00000005413
I
0.823
ENSMEUG00000009510
Macropus eugenii
ENSMEUG00000009510
I
0.823
ENSSSCG00000024404
Sus scrofa
ENSSSCG00000024404
I
0.817
ENSSSCG00000026570
Sus scrofa
ENSSSCG00000026570
I
0.817
SNAI2
Bos taurus
ENSBTAG00000013227
I
0.813
ENSOARG00000013030
Ovis aries
ENSOARG00000013030
I
0.813
ENSP00000020945-D1
Bos grunniens
ENSP00000020945-D1
I
0.813
snai2
Takifugu rubripes
ENSTRUG00000006860
I
0.807
snai2
Oryzias latipes
ENSORLG00000017475
I
0.807
ENSONIG00000009542
Oreochromis niloticus
ENSONIG00000009542
I
0.807
snai2
Tetraodon nigroviridis
ENSTNIG00000008504
I
0.807
ENSLOCG00000005992
Lepisosteus oculatus
ENSLOCG00000005992
I
0.807
ENSGMOG00000002669
Gadus morhua
ENSGMOG00000002669
I
0.805
ENSPFOG00000014336
Poecilia formosa
ENSPFOG00000014336
I
0.803
snai2
Gasterosteus aculeatus
ENSGACG00000017935
I
0.803
snai2
Danio rerio
ENSDARG00000040046
I
0.803
ENSXMAG00000019030
Xiphophorus maculatus
ENSXMAG00000019030
I
0.803
ENSAMXG00000011013
Astyanax mexicanus
ENSAMXG00000011013
I
0.783
ENSLACG00000004705
Latimeria chalumnae
ENSLACG00000004705
I
0.778
ENSLOCG00000004887
Lepisosteus oculatus
ENSLOCG00000004887
I
0.775
LCUP013268
Lucilia cuprina
LCUP013268
I
0.772
MDOA014024
Musca domestica
MDOA014024
I
0.772
GK18133
Drosophila willistoni
FBgn0220132
I
0.769
LDEC001157
Leptinotarsa decemlineata
LDEC001157
I
0.769
GH13754
Drosophila grimshawi
FBgn0121230
I
0.769
GI17894
Drosophila mojavensis
FBgn0140635
I
0.769
GJ17399
Drosophila virilis
FBgn0204571
I
0.769
GF15382
Drosophila ananassae
FBgn0092407
I
0.767
GG25158
Drosophila erecta
FBgn0117283
I
0.767
GA17666
Drosophila pseudoobscura
FBgn0077676
I
0.767
esg
Drosophila melanogaster
FBgn0001981
D
0.767
CapteG76255
Capitella teleta
CapteG76255
I
0.767
GL26425
Drosophila persimilis
FBgn0164007
I
0.767
GE20968
Drosophila yakuba
FBgn0238253
I
0.767
TC014474
Tribolium castaneum
TC014474
I
0.767
Sakowv30043351m.g
Saccoglossus kowalevskii
Sakowv30043351m.g
I
0.764
Alligator_sinensis_CCG001703.1
Alligator sinensis
Alligator_sinensis_CCG001703.1
I
0.762
LotgiG114290
Lottia gigantea
LotgiG114290
I
0.761
snai1.S
Xenopus laevis
XB-GENE-865328
I
0.759
snai1
Xenopus tropicalis
XB-GENE-479970
I
0.759
Cmyd_10017446
Chelonia mydas
Cmyd_10017446
I
0.758
KGM_17970
Danaus plexippus
KGM_17970
I
0.757
HMEL002306
Heliconius melpomene
HMEL002306
I
0.757
MCINX001355
Melitaea cinxia
MCINX001355
I
0.757
GD24004
Drosophila simulans
FBgn0195364
I
0.757
L798_10614
Zootermopsis nevadensis
L798_10614
I
0.757
PPAI008011
Phlebotomus papatasi
PPAI008011
I
0.756
ENSPSIG00000003607
Pelodiscus sinensis
ENSPSIG00000003607
I
0.756