CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cmyd_10003405
(
Chelonia mydas
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Cmyd_10003405
T134218_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RREB1
M02665_2.00
Homo sapiens
MCMCMAMMCAMCMMCHMMSV
BSKKDGKKGKTGKKTKGKGK
SELEX
Mathelier et al.(2014)
MA0073.1
0.803
0.945
RREB1
M10203_2.00
Homo sapiens
MCCCAAMCMMMCMM
KKGKKKGKTTGGGK
Transfac
Matys et al.(2006)
V$RREB1_01
0.803
0.945
RREB1
M10204_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RREB1_Q5
0.803
0.945
RREB1
M10205_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RREB_Q5
0.803
0.945
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cmyd_10003405
C2H2 ZF
114
136
YTCPLCEKICTTQHQLTMHIRQH
Cmyd_10003405
C2H2 ZF
145
167
HSCSICGKSLSSASSLDRHMLVH
Cmyd_10003405
C2H2 ZF
173
190
YKCSVCGQSFTTNGNMHS
Cmyd_10003405
C2H2 ZF
818
840
YPCRFCDQVFAFSGVLRAHIRSH
Cmyd_10003405
C2H2 ZF
846
868
YQCNICEYIAADKAALIRHLRTH
Cmyd_10003405
C2H2 ZF
874
897
YICKICHYPFTVKANCERHLRKKH
Cmyd_10003405
C2H2 ZF
928
950
TVCKFCGEDLKHYRALRIHMRTH
Cmyd_10003405
C2H2 ZF
959
982
FECKECGTAFSAKRNCIHHILKQH
Cmyd_10003405
C2H2 ZF
1368
1390
ITCPYCPRVFPWASSLQRHMLTH
Cmyd_10003405
C2H2 ZF
1396
1419
FPCQKCDVFFSTKSNCERHLLRKH
Cmyd_10003405
C2H2 ZF
1669
1691
KVCTVCNKRFWSLQDLTRHMRSH
Cmyd_10003405
C2H2 ZF
1697
1719
YKCQTCERTFTLKHSLVRHQRIH
Links
Other
C2H2 ZF
family TFs
Other
Chelonia mydas
TFs
20 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy