Carubv10015674m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10015674m.g T142718_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G15740
M06810_2.00 		Arabidopsis thaliana
WCGHHDYCGWY
RWCGRHDDCGW		 Dap-seq
OMalley et al.(2016)
AT2G15740_col_a 		0.768 0.826
AT5G22990
M06821_2.00 		Arabidopsis thaliana
WCGWHDTCGWYNHNN
NNDNRWCGAHDWCGW		 Dap-seq
OMalley et al.(2016)
AT5G22990_col_a 		0.766 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015674m C2H2 ZF 35 57

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra039606 Brassica rapa Bra039606 I 0.768
scaffold_303767.1 Arabidopsis lyrata scaffold_303767.1 I 0.768
AT2G15740 Arabidopsis thaliana AT2G15740 D 0.768
Cagra.6034s0007 Capsella grandiflora Cagra.6034s0007 I 0.768
Carubv10015875m.g Capsella rubella Carubv10015875m.g I 0.768
Thhalv10023174m.g Eutrema salsugineum Thhalv10023174m.g I 0.768
Carubv10016477m.g Capsella rubella Carubv10016477m.g I 0.768
Carubv10002800m.g Capsella rubella Carubv10002800m.g I 0.766
Thhalv10015522m.g Eutrema salsugineum Thhalv10015522m.g I 0.766
scaffold_602360.1 Arabidopsis lyrata scaffold_602360.1 I 0.766
AT5G22990 Arabidopsis thaliana AT5G22990 D 0.766
AT2G18490 Arabidopsis thaliana AT2G18490 I 0.766
Bo7g010020 Brassica oleracea Bo7g010020 I 0.766
Bo9g147060 Brassica oleracea Bo9g147060 I 0.766
Bostr.10199s0147 Boechera stricta Bostr.10199s0147 I 0.766
Cagra.3954s0034 Capsella grandiflora Cagra.3954s0034 I 0.766