maker-nMf.1.1.scaf05782-augustus-gene-0.8 (Meloidogyne floridensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 maker-nMf.1.1.scaf05782-augustus-gene-0.8 T154856_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
che-1
M00609_2.00 		Caenorhabditis elegans
NGAARCCHNN
NNDGGYTTCN		 PBM
Narasimhan et al.(2015)
pTH10015 		0.770 0.841
che-1
M08451_2.00 		Caenorhabditis elegans
SGYTTC
GAARCS		 COMPILED
Mathelier et al.(2014)
MA0260.1 		0.770 0.841
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
maker-nMf.1.1.scaf05782-augustus-gene-0.8-mRNA-1 C2H2 ZF 1 19
maker-nMf.1.1.scaf05782-augustus-gene-0.8-mRNA-1 C2H2 ZF 25 47
maker-nMf.1.1.scaf05782-augustus-gene-0.8-mRNA-1 C2H2 ZF 53 75
maker-nMf.1.1.scaf05782-augustus-gene-0.8-mRNA-1 C2H2 ZF 81 103

Links

Other C2H2 ZF family TFs
Other Meloidogyne floridensis TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Minc12570 Meloidogyne incognita Minc12570 I 0.825
TCNE_0000019201 Toxocara canis TCNE_0000019201 I 0.798
scaffold142-EXSNAP2012.10 Pristionchus exspectatus scaffold142-EXSNAP2012.10 I 0.784
ACOC_0000430401 Angiostrongylus costaricensis ACOC_0000430401 N 0.780
HPLM_0001518701 Haemonchus placei HPLM_0001518701 I 0.773
CBN30944 Caenorhabditis brenneri CBN30944 I 0.770
che-1 Caenorhabditis elegans WBGene00000483 D 0.770
CRE23561 Caenorhabditis remanei CRE23561 I 0.770
CBG12674 Caenorhabditis briggsae CBG12674 I 0.770
NBR_0000131901 Nippostrongylus brasiliensis NBR_0000131901 I 0.761
NECAME_14596 Necator americanus NECAME_14596 I 0.760