GPUH_0000007401 (Gongylonema pulchrum)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) GPUH_0000007401 T174927_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.901 0.901
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.901 0.901
EBF2
M10466_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_02 		0.901 0.901
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.887 0.887
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.887 0.887
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.887 0.887
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.887 0.887
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.887 0.887
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.887 0.887
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPUH_0000007401-mRNA-1 EBF1 1 71

Links

Other EBF1 family TFs
Other Gongylonema pulchrum TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSGMOG00000012325 Gadus morhua ENSGMOG00000012325 I 1.000
MDOA011385 Musca domestica MDOA011385 I 0.915
ebf2 Takifugu rubripes ENSTRUG00000011528 I 0.915
ebf2 Gasterosteus aculeatus ENSGACG00000008451 I 0.915
ENSXMAG00000017859 Xiphophorus maculatus ENSXMAG00000017859 I 0.915
LOAG_18199 Loa loa LOAG_18199 I 0.901
KGM_09934 Danaus plexippus KGM_09934 I 0.901
ENSNLEG00000016189 Nomascus leucogenys ENSNLEG00000016189 I 0.901
ENSMPUG00000003195 Mustela putorius furo ENSMPUG00000003195 I 0.901
EBF2 Loxodonta africana ENSLAFG00000022465 I 0.901
EBF2 Myotis lucifugus ENSMLUG00000011509 I 0.901
Afo_R003215 Aptenodytes forsteri Afo_R003215 I 0.901
ENSOARG00000009825 Ovis aries ENSOARG00000009825 I 0.901
ENSSHAG00000017239 Sarcophilus harrisii ENSSHAG00000017239 I 0.901
EBF2 Meleagris gallopavo ENSMGAG00000000791 I 0.901
GA24435 Drosophila pseudoobscura FBgn0245832 I 0.901
ENSPPYG00000018454 Pongo abelii ENSPPYG00000018454 I 0.901
CBG07590 Caenorhabditis briggsae CBG07590 I 0.901
GF11778 Drosophila ananassae FBgn0088818 I 0.901
EBF2 Pan troglodytes ENSPTRG00000003058 I 0.901
Ebf2 Rattus norvegicus ENSRNOG00000011548 I 0.901
GL10656 Drosophila persimilis FBgn0148266 I 0.901
ENSPANG00000020231 Papio anubis ENSPANG00000020231 I 0.901
EBF2 Otolemur garnettii ENSOGAG00000010783 I 0.901
EBF1 Tetraodon nigroviridis ENSTNIG00000016148 I 0.901
ENSONIG00000008631 Oreochromis niloticus ENSONIG00000008631 I 0.901
GK23295 Drosophila willistoni FBgn0225257 I 0.901
GJ21945 Drosophila virilis FBgn0209060 I 0.901
EBF2 Oryctolagus cuniculus ENSOCUG00000011972 I 0.901
EBF2 Gorilla gorilla ENSGGOG00000001585 I 0.901
DME_0000265301 Dracunculus medinensis DME_0000265301 I 0.901
L889_g1820 Steinernema feltiae L889_g1820 I 0.901
BTMF_0000305001 Brugia timori BTMF_0000305001 I 0.901
EBF2 Cavia porcellus ENSCPOG00000001463 I 0.901
ebf2.S Xenopus laevis XB-GENE-971141 I 0.901
EBF2 Canis familiaris ENSCAFG00000008918 I 0.901
EBF2 Bos taurus ENSBTAG00000040390 I 0.901
ENSAMEG00000000326 Ailuropoda melanoleuca ENSAMEG00000000326 I 0.901
nRc.2.0.1.g06532 Romanomermis culicivorax nRc.2.0.1.g06532 I 0.901
nDi.2.2.2.g04990 Dirofilaria immitis nDi.2.2.2.g04990 I 0.901
L898_g8304 Steinernema monticolum L898_g8304 I 0.901
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I 0.901
ebf1b Danio rerio ENSDARG00000069196 I 0.901
ebf1a Danio rerio ENSDARG00000099849 I 0.901
EBF2 Homo sapiens ENSG00000221818 D 0.901
EBF2 Sus scrofa ENSSSCG00000009655 I 0.901
EBF1 Gasterosteus aculeatus ENSGACG00000020458 I 0.901
EBF2 Gallus gallus ENSGALG00000000242 I 0.901
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I 0.901
ENSLACG00000017271 Latimeria chalumnae ENSLACG00000017271 I 0.901
EBF2 Dasypus novemcinctus ENSDNOG00000040488 I 0.901
ebf2 Xenopus tropicalis XB-GENE-971136 I 0.901
EBF2 Taeniopygia guttata ENSTGUG00000004267 I 0.901
LCUP013862 Lucilia cuprina LCUP013862 I 0.901
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I 0.887
EBF4 Tursiops truncatus ENSTTRG00000003459 I 0.887
Cmyd_10020950 Chelonia mydas Cmyd_10020950 I 0.887
ebf4 Xenopus tropicalis XB-GENE-6030626 I 0.887
ENSP00000405003 Macaca fascicularis ENSP00000405003 I 0.887
ENSP00000347463-D1 Bos grunniens ENSP00000347463-D1 I 0.887
SPU_004702 Strongylocentrotus purpuratus SPU_004702 I 0.887
LotgiG225788 Lottia gigantea LotgiG225788 I 0.887
ENSPPYG00000002766 Pongo abelii ENSPPYG00000002766 I 0.887
EBF3 Homo sapiens ENSG00000108001 D 0.887
EBF3 Taeniopygia guttata ENSTGUG00000011600 I 0.887
EBF3 Macaca mulatta ENSMMUG00000011447 I 0.887
Ebf3 Mus musculus ENSMUSG00000010476 I 0.887
ENSFALG00000001212 Ficedula albicollis ENSFALG00000001212 I 0.887
ENSCSAG00000010974 Chlorocebus sabaeus ENSCSAG00000010974 I 0.887
EBF3 Anolis carolinensis ENSACAG00000008590 I 0.887
ENSAMEG00000011229 Ailuropoda melanoleuca ENSAMEG00000011229 I 0.887
ENSAMXG00000003402 Astyanax mexicanus ENSAMXG00000003402 I 0.887
EBF4 Callithrix jacchus ENSCJAG00000021027 I 0.887
Ebf4 Mus musculus ENSMUSG00000053552 D 0.887
ebf3a Gasterosteus aculeatus ENSGACG00000009548 I 0.887
ENSPANG00000020188 Papio anubis ENSPANG00000020188 I 0.887
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I 0.887
EBF4 Pteropus vampyrus ENSPVAG00000006830 I 0.887
ENSNLEG00000009110 Nomascus leucogenys ENSNLEG00000009110 I 0.887
ENSPSIG00000016691 Pelodiscus sinensis ENSPSIG00000016691 I 0.887
EBF4 Oryzias latipes ENSORLG00000020414 I 0.887
EBF1 Tupaia belangeri ENSTBEG00000007800 I 0.887
Ebf3 Rattus norvegicus ENSRNOG00000016102 I 0.887
EBF3 Otolemur garnettii ENSOGAG00000007572 I 0.887
EBF1 Loxodonta africana ENSLAFG00000017522 I 0.873
GPLIN_000159400 Globodera pallida GPLIN_000159400 I 0.873
ANCCAN_06536 Ancylostoma caninum ANCCAN_06536 I 0.859
TTAC_0000009401 Hydatigera taeniaeformis TTAC_0000009401 I 0.859
T265_13606 Opisthorchis viverrini T265_13606 N 0.859
csin100403 Clonorchis sinensis csin100403 N 0.859
EBF3 Echinops telfairi ENSETEG00000014060 I 0.859
SMU15024001 Schmidtea mediterranea SMU15024001 I 0.859
HelroG112029 Helobdella robusta HelroG112029 I 0.859
ENSCSAVG00000000458 Ciona savignyi ENSCSAVG00000000458 I 0.845
Sjc_0015600 Schistosoma japonicum Sjc_0015600 I 0.845
ENSCING00000003209 Ciona intestinalis ENSCING00000003209 I 0.845
EBF4 Echinops telfairi ENSETEG00000015956 I 0.845
NEMVEDRAFT_v1g164975 Nematostella vectensis NEMVEDRAFT_v1g164975 N 0.803
EBF3 Canis familiaris ENSCAFG00000013267 I 0.761
ENSMPUG00000002449 Mustela putorius furo ENSMPUG00000002449 I 0.761
ENSSHAG00000000353 Sarcophilus harrisii ENSSHAG00000000353 I 0.761
SINV26263 Solenopsis invicta SINV26263 I 0.729