GPLIN_000159400 (Globodera pallida)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) GPLIN_000159400 T174926_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.851 0.851
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.843 0.843
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.836 0.836
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.836 0.836
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.836 0.836
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.828 0.828
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.828 0.828
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.813 0.813
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_000159400 EBF1 1 136

Links

Other EBF1 family TFs
Other Globodera pallida TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSGMOG00000012325 Gadus morhua ENSGMOG00000012325 I 0.963
SINV26263 Solenopsis invicta SINV26263 I 0.938
ENSACAG00000007938 Anolis carolinensis ENSACAG00000007938 I 0.881
EBF2 Homo sapiens ENSG00000221818 D 0.878
ENSCSAG00000016068 Chlorocebus sabaeus ENSCSAG00000016068 I 0.878
Hba_09581 Heterorhabditis bacteriophora Hba_09581 I 0.875
GPUH_0000007401 Gongylonema pulchrum GPUH_0000007401 I 0.873
EBF2 Callithrix jacchus ENSCJAG00000019921 I 0.866
ASTEI06455 Anopheles stephensi ASTEI06455 I 0.865
ENSAPLG00000015476 Anas platyrhynchos ENSAPLG00000015476 I 0.864
EBF1 Meleagris gallopavo ENSMGAG00000004896 I 0.864
ENSCSAG00000004432 Chlorocebus sabaeus ENSCSAG00000004432 I 0.860
EBF3 Oryctolagus cuniculus ENSOCUG00000008915 I 0.860
ENSMPUG00000002449 Mustela putorius furo ENSMPUG00000002449 I 0.852
EBF3 Canis familiaris ENSCAFG00000013267 I 0.852
ENSSHAG00000000353 Sarcophilus harrisii ENSSHAG00000000353 I 0.852
EBF2 Myotis lucifugus ENSMLUG00000011509 I 0.851
LLOJ000215 Lutzomyia longipalpis LLOJ000215 I 0.847
EBF4 Homo sapiens ENSG00000088881 D 0.847
EBF2 Meleagris gallopavo ENSMGAG00000000791 I 0.843
Afo_R003215 Aptenodytes forsteri Afo_R003215 I 0.843
EBF2 Taeniopygia guttata ENSTGUG00000004267 I 0.843
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I 0.843
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I 0.843
EBF2 Gallus gallus ENSGALG00000000242 I 0.843
ebf2.S Xenopus laevis XB-GENE-971141 I 0.843
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I 0.843
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I 0.843
ENSPFOG00000007531 Poecilia formosa ENSPFOG00000007531 I 0.842
ENSSTOG00000016352 Ictidomys tridecemlineatus ENSSTOG00000016352 I 0.841
nRc.2.0.1.g06532 Romanomermis culicivorax nRc.2.0.1.g06532 I 0.836
ENSACAG00000010823 Anolis carolinensis ENSACAG00000010823 I 0.836
ENSCSAVG00000000458 Ciona savignyi ENSCSAVG00000000458 I 0.828
EBF3 Gallus gallus ENSGALG00000010461 I 0.828
BTMF_0000130101 Brugia timori BTMF_0000130101 I 0.826
ENSAMXG00000001200 Astyanax mexicanus ENSAMXG00000001200 I 0.823
Sakowv30011033m.g Saccoglossus kowalevskii Sakowv30011033m.g I 0.823
Ppa-unc-3 Pristionchus pacificus PPA20518 I 0.821
EBF4 Macaca mulatta ENSMMUG00000021331 I 0.812
Pvit_12666 Pogona vitticeps Pvit_12666 I 0.812
estExt_gwp.C_3380002 Branchiostoma floridae estExt_gwp.C_3380002 I 0.812
ENSLACG00000017271 Latimeria chalumnae ENSLACG00000017271 I 0.810
ENSPMAG00000003287 Petromyzon marinus ENSPMAG00000003287 I 0.810
ENSLACG00000005494 Latimeria chalumnae ENSLACG00000005494 I 0.810
ENSFCAG00000027202 Felis catus ENSFCAG00000027202 I 0.810
ENSSTOG00000007966 Ictidomys tridecemlineatus ENSSTOG00000007966 I 0.810
EBF3 Bos taurus ENSBTAG00000008272 I 0.810
ENSMGAG00000016563 Meleagris gallopavo ENSMGAG00000016563 I 0.810
EBF3 Myotis lucifugus ENSMLUG00000005478 I 0.810
EBF1 Homo sapiens ENSG00000164330 D 0.810
Aan_R013029 Calypte anna Aan_R013029 I 0.810
PXEA_0001364901 Protopolystoma xenopodis PXEA_0001364901 I 0.807
EBF1 Otolemur garnettii ENSOGAG00000013992 I 0.807
MDOA011385 Musca domestica MDOA011385 I 0.806
EBF1 Tetraodon nigroviridis ENSTNIG00000016148 I 0.806
RPRC005513 Rhodnius prolixus RPRC005513 I 0.804
EBF4 Callithrix jacchus ENSCJAG00000021027 I 0.799
ENSPSIG00000005604 Pelodiscus sinensis ENSPSIG00000005604 I 0.797
ENSXMAG00000010351 Xiphophorus maculatus ENSXMAG00000010351 I 0.794
HelroG112029 Helobdella robusta HelroG112029 I 0.791
Pvit_11383 Pogona vitticeps Pvit_11383 I 0.785
ACYPI007722 Acyrthosiphon pisum ACYPI007722 I 0.778
nRc.2.0.1.g14013 Romanomermis culicivorax nRc.2.0.1.g14013 I 0.775
ENSOANG00000004212 Ornithorhynchus anatinus ENSOANG00000004212 I 0.775
Alligator_sinensis_CCG017609.1 Alligator sinensis Alligator_sinensis_CCG017609.1 I 0.775
ACAC_0000654401 Angiostrongylus cantonensis ACAC_0000654401 I 0.773
maker-nMf.1.1.scaf01942-snap-gene-0.10 Meloidogyne floridensis maker-nMf.1.1.scaf01942-snap-gene-0.10 I 0.772
Brh_R003197 Buceros rhinoceros Brh_R003197 I 0.771
Ebf1 Rattus norvegicus ENSRNOG00000028845 I 0.768
ASIS004664 Anopheles sinensis ASIS004664 I 0.766
Gfo_R013267 Geospiza fortis Gfo_R013267 I 0.761
Brh_R001594 Buceros rhinoceros Brh_R001594 I 0.761
Afo_R012023 Aptenodytes forsteri Afo_R012023 I 0.761
ENSACAG00000003097 Anolis carolinensis ENSACAG00000003097 I 0.761
LotgiG225788 Lottia gigantea LotgiG225788 I 0.761
ACOM041529 Anopheles coluzzii ACOM041529 I 0.761
Tal_R004164 Tyto alba Tal_R004164 I 0.761
Sjc_0015600 Schistosoma japonicum Sjc_0015600 I 0.757
ASTEI06456 Anopheles stephensi ASTEI06456 I 0.755
ENSAMEG00000006442 Ailuropoda melanoleuca ENSAMEG00000006442 I 0.754
ENSSTOG00000011505 Ictidomys tridecemlineatus ENSSTOG00000011505 I 0.754
ENSMLUG00000004376 Myotis lucifugus ENSMLUG00000004376 I 0.754
EBF1 Sus scrofa ENSSSCG00000017046 I 0.754
EBF3 Microcebus murinus ENSMICG00000008536 I 0.753
EBF3 Callithrix jacchus ENSCJAG00000014357 I 0.753
EBF3 Dasypus novemcinctus ENSDNOG00000002588 I 0.750
Myotis_brandtii_Ebf1_10034833 Myotis brandtii Myotis_brandtii_Ebf1_10034833 I 0.750
HMEL014948 Heliconius melpomene HMEL014948 I 0.750
ENSPANG00000010656 Papio anubis ENSPANG00000010656 I 0.750
EBF1 Equus caballus ENSECAG00000007964 I 0.750
Pvit_12046 Pogona vitticeps Pvit_12046 I 0.750
BGIBMGA011565 Bombyx mori BGIBMGA011565 I 0.750
Alligator_sinensis_CCG000393.1 Alligator sinensis Alligator_sinensis_CCG000393.1 I 0.750
ENSP00000347463 Macaca fascicularis ENSP00000347463 I 0.748
EBF1 Tupaia belangeri ENSTBEG00000007800 I 0.747
HNAJ_0001308901 Hymenolepis nana HNAJ_0001308901 I 0.743
ENSOARG00000012836 Ovis aries ENSOARG00000012836 I 0.739
TRE_0001373801 Trichobilharzia regenti TRE_0001373801 I 0.733
ACUA010350 Anopheles culicifacies ACUA010350 I 0.731
AFUN004906 Anopheles funestus AFUN004906 I 0.731
EBF4 Loxodonta africana ENSLAFG00000006892 I 0.726
ENSTSYG00000019489 Tarsius syrichta ENSTSYG00000019489 I 0.726
DILT_0000082701 Diphyllobothrium latum DILT_0000082701 I 0.723
CJA00446 Caenorhabditis japonica CJA00446 I 0.722
ACHR004409 Anopheles christyi ACHR004409 I 0.721
AALB010330 Anopheles albimanus AALB010330 I 0.714
YQE_08127 Dendroctonus ponderosae YQE_08127 I 0.710
ANCDUO_04459 Ancylostoma duodenale ANCDUO_04459 N 0.707
AEPI003553 Anopheles epiroticus AEPI003553 I 0.704
AMEC016105 Anopheles melas AMEC016105 I 0.703
scaffold24-EXSNAP2012.58 Pristionchus exspectatus scaffold24-EXSNAP2012.58 I 0.703
AMEM017983 Anopheles merus AMEM017983 I 0.703
Hsal_03263--XP_394171.3_APIME Harpegnathos saltator Hsal_03263--XP_394171.3_APIME I 0.700
Cflo_00077--XP_394171.3_APIME Camponotus floridanus Cflo_00077--XP_394171.3_APIME I 0.700
ACEP22947 Atta cephalotes ACEP22947 I 0.700
MCINX016126 Melitaea cinxia MCINX016126 I 0.700
GH12956 Drosophila grimshawi FBgn0120434 I 0.700