CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.013G250300
(
Gossypium raimondii
)
EIN3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF04873 (EIN3)
IPR006957
Gorai.013G250300
T175363_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
EIL3
M00723_2.00
Arabidopsis thaliana
NAGRTWCATNN
NNATGWAYCTN
PBM
Chang et al.(2013)
pTH7933
0.750
0.750
EIL3
M06877_2.00
Arabidopsis thaliana
NYGTCYAGRTWCAWDNWHNHH
DDNDWNHWTGWAYCTRGACRN
Dap-seq
OMalley et al.(2016)
EIL3_col_b
0.750
0.750
OS09G0490200
M01970_2.00
Oryza sativa
NMGRTACATNN
NNATGTAYCKN
PBM
Weirauch et al.(2014)
pTH9013
0.713
0.713
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.013G250300.1
EIN3
38
282
DELERRMWKDSVRLRRIKERERVAAQQAAELNQTSELARRKKISRAQDGILKNMLMLMEVYNARGFVYGIVPEKGKAVSGASDNLRAWWKEKVNFDKNGPAAIVKYEAECLAMSVSDRNRNGNPCSSLQDLQDATIGSLLSTLMQHCDPPQRKYPLEKRIPPPWWPTGNEDWWVKLGLQRGDSPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVLQSKCLQGKLTAKESAIWLGVLGREE
Gorai.013G250300.2
EIN3
14
258
DELERRMWKDSVRLRRIKERERVAAQQAAELNQTSELARRKKISRAQDGILKNMLMLMEVYNARGFVYGIVPEKGKAVSGASDNLRAWWKEKVNFDKNGPAAIVKYEAECLAMSVSDRNRNGNPCSSLQDLQDATIGSLLSTLMQHCDPPQRKYPLEKRIPPPWWPTGNEDWWVKLGLQRGDSPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVLQSKCLQGKLTAKESAIWLGVLGREE
Links
Other
EIN3
family TFs
Other
Gossypium raimondii
TFs
66 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCM_040510
Theobroma cacao
TCM_040510
I
0.811
PRUPE_ppa003113mg
Prunus persica
PRUPE_ppa003113mg
I
0.807
Cucsa.143220
Cucumis sativus
Cucsa.143220
I
0.807
cassava2120.valid.m1
Manihot esculenta
cassava2120.valid.m1
I
0.798
MDP0000562585
Malus domestica
MDP0000562585
I
0.795
MDP0000565880
Malus domestica
MDP0000565880
I
0.795
MDP0000490180
Malus domestica
MDP0000490180
I
0.795
Gorai.009G071400
Gossypium raimondii
Gorai.009G071400
I
0.794
30169.m006395
Ricinus communis
30169.m006395
I
0.791
Gorai.010G128700
Gossypium raimondii
Gorai.010G128700
I
0.791
orange1.1g007662m.g
Citrus sinensis
orange1.1g007662m.g
I
0.789
Eucgr.B03664
Eucalyptus grandis
Eucgr.B03664
I
0.789
Ciclev10015261m.g
Citrus clementina
Ciclev10015261m.g
I
0.789
gene20650-v1.0-hybrid
Fragaria vesca
gene20650-v1.0-hybrid
I
0.789
Pm028171
Prunus mume
Pm028171
I
0.787
POPTR_0003s22090
Populus trichocarpa
POPTR_0003s22090
I
0.783
PK19114.1
Cannabis sativa
PK19114.1
I
0.781
EIL3
Vitis vinifera
VIT_06s0004g01610
I
0.779
Lus10031817.g
Linum usitatissimum
Lus10031817.g
I
0.779
chr3.LjB09K03.50.nc
Lotus japonicus
chr3.LjB09K03.50.nc
I
0.777
POPTR_0001s05360
Populus trichocarpa
POPTR_0001s05360
I
0.777
Lus10031245.g
Linum usitatissimum
Lus10031245.g
I
0.773
SapurV1A.0009s0320
Salix purpurea
SapurV1A.0009s0320
I
0.773
GLYMA15G03650
Glycine max
GLYMA15G03650
I
0.769
Traes_5DL_62DEF8361
Triticum aestivum
Traes_5DL_62DEF8361
I
0.769
Ca_02669
Cicer arietinum
Ca_02669
I
0.769
SapurV1A.0850s0030
Salix purpurea
SapurV1A.0850s0030
I
0.769
MTR_2g098470
Medicago truncatula
MTR_2g098470
I
0.766
SELMODRAFT_419770
Selaginella moellendorffii
SELMODRAFT_419770
I
0.762
Aquca_007_00017
Aquilegia coerulea
Aquca_007_00017
I
0.762
GLYMA13G41751
Glycine max
GLYMA13G41751
I
0.757
Solyc01g014480.2
Solanum lycopersicum
Solyc01g014480.2
I
0.754
PGSC0003DMG400029908
Solanum tuberosum
PGSC0003DMG400029908
I
0.749
Bra008110
Brassica rapa
Bra008110
I
0.749
Bo6g118030
Brassica oleracea
Bo6g118030
I
0.744
EIL3
Arabidopsis thaliana
AT1G73730
D
0.744
Bostr.3288s0016
Boechera stricta
Bostr.3288s0016
I
0.742
Bo6g087550
Brassica oleracea
Bo6g087550
I
0.742
EIL3
Arabidopsis lyrata
scaffold_202309.1
I
0.740
Thhalv10018327m.g
Eutrema salsugineum
Thhalv10018327m.g
I
0.740
Bra015970
Brassica rapa
Bra015970
I
0.738
cassava30700.valid.m1
Manihot esculenta
cassava30700.valid.m1
I
0.736
Cagra.0876s0005
Capsella grandiflora
Cagra.0876s0005
I
0.736
Carubv10020043m.g
Capsella rubella
Carubv10020043m.g
I
0.736
mgf020935m
Mimulus guttatus
mgf020935m
I
0.733
GSMUA_Achr9G27680_001
Musa acuminata
GSMUA_Achr9G27680_001
I
0.730
AMTR_s00022p00216890
Amborella trichopoda
AMTR_s00022p00216890
I
0.727
PGSC0003DMG400021381
Solanum tuberosum
PGSC0003DMG400021381
I
0.725
Solyc01g006650.1
Solanum lycopersicum
Solyc01g006650.1
I
0.725
Traes_5BL_B6051DD37
Triticum aestivum
Traes_5BL_B6051DD37
I
0.721
Si029259m.g
Setaria italica
Si029259m.g
I
0.721
F775_17920
Aegilops tauschii
F775_17920
I
0.721
Traes_5AL_B65EF5518
Triticum aestivum
Traes_5AL_B65EF5518
I
0.717
OBART09G14750
Oryza barthii
OBART09G14750
I
0.717
OGLUM09G15380
Oryza glumaepatula
OGLUM09G15380
I
0.717
ONIVA08G17420
Oryza nivara
ONIVA08G17420
I
0.717
ORGLA09G0113600
Oryza glaberrima
ORGLA09G0113600
I
0.717
GSMUA_Achr3G11160_001
Musa acuminata
GSMUA_Achr3G11160_001
I
0.715
MLOC_10823
Hordeum vulgare
MLOC_10823
I
0.715
GSMUA_Achr8G25580_001
Musa acuminata
GSMUA_Achr8G25580_001
I
0.709
Pavir.J14329
Panicum virgatum
Pavir.J14329
I
0.709
OPUNC09G13210
Oryza punctata
OPUNC09G13210
I
0.709
POPTR_0001s05370
Populus trichocarpa
POPTR_0001s05370
I
0.708
PDK_20s1301801g002
Phoenix dactylifera
PDK_20s1301801g002
I
0.706
BRADI3G39970
Brachypodium distachyon
BRADI3G39970
I
0.705