CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
BGIOSGA011986
(
Oryza indica
)
FAR1,GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03101 (FAR1)
PF00320 (GATA)
IPR004330
IPR000679
BGIOSGA011986
T182277_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIOSGA011986-PA
GATA
30
67
CLRCGISANATPHMRRGPEGRRTLCNACGIAWAKGKVR
BGIOSGA011986-PA
FAR1
100
188
EFYNRYAGHVGFSVRKSSSDKSAENITRSRTFVCSREGFRKDKKGAKEVKRPRPETRIGCPARMSIKITSDGKYRISEFVPDHNHQPAP
Links
Other
FAR1,GATA
family TFs
Other
Oryza indica
TFs
20 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ORGLA03G0057700
Oryza glaberrima
ORGLA03G0057700
N
1.000
OS03G0181600
Oryza sativa
OS03G0181600
N
1.000
OB03G16050
Oryza brachyantha
OB03G16050
N
0.982
Traes_4AS_124CCE880
Triticum aestivum
Traes_4AS_124CCE880
N
0.920
Traes_4DL_C77385A0D
Triticum aestivum
Traes_4DL_C77385A0D
N
0.920
GSMUA_Achr2G15020_001
Musa acuminata
GSMUA_Achr2G15020_001
N
0.856
GSMUA_Achr6G36080_001
Musa acuminata
GSMUA_Achr6G36080_001
N
0.800
GRMZM2G114461
Zea mays
GRMZM2G114461
N
0.734
OB07G27730
Oryza brachyantha
OB07G27730
N
0.734
Traes_2DS_C83B7F5CF
Triticum aestivum
Traes_2DS_C83B7F5CF
N
0.726
Traes_2BS_59D534318
Triticum aestivum
Traes_2BS_59D534318
N
0.726
TRIUR3_17271
Triticum urartu
TRIUR3_17271
N
0.726
ORGLA07G0170400
Oryza glaberrima
ORGLA07G0170400
N
0.726
Traes_2AS_3DDBFDD8D
Triticum aestivum
Traes_2AS_3DDBFDD8D
N
0.726
MLOC_70827
Hordeum vulgare
MLOC_70827
N
0.726
OS07G0615900
Oryza sativa
OS07G0615900
N
0.726
Pavir.Bb03328
Panicum virgatum
Pavir.Bb03328
N
0.718
Pavir.Ba00417
Panicum virgatum
Pavir.Ba00417
N
0.718
BRADI1G20830
Brachypodium distachyon
BRADI1G20830
N
0.718
BGIOSGA026135
Oryza indica
BGIOSGA026135
N
0.718