CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.003G130600
(
Gossypium raimondii
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Gorai.003G130600
T202613_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.003G130600.1
GRAS
396
767
LRTLLILCAQAITSNDNVTAKELIKQIRQHSSPYGDGSQRLAHYFVDALEARLAGTGTQIYTSLIAKRTSAADMLKAYQVYISVCPFVKVPIIFANNYISKAAEKATKLHIIDFGIFYGFHWPALIHRLANRPGGPPKLRITGIEFPQPGFRPAEAVQETGRRLVKYCERYNVPFEYHAIAQKWETIRTEDLKINSDEVIAVNCLCRFRNLLDETVVLNSPRDTVLNLIRKINPDVFVHSVVNGSYNAPFFVTRFREALFHFSALFDMCETNVSHEDNMRSMLEQKFYGREIMNIIACEGTERVERPESYKQWQVRNMRAGFVQLPLNPELMKRVKERVKARYHSDFMVDVDGRWMLQGWKGRIIYASSAWI
Links
Other
GRAS
family TFs
Other
Gossypium raimondii
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCM_041815
Theobroma cacao
TCM_041815
N
0.870
Gorai.001G111500
Gossypium raimondii
Gorai.001G111500
N
0.841
POPTR_0009s03790
Populus trichocarpa
POPTR_0009s03790
N
0.751
evm.TU.supercontig_81.126
Carica papaya
evm.TU.supercontig_81.126
N
0.746
Pm000719
Prunus mume
Pm000719
N
0.743
cassava19450.valid.m1
Manihot esculenta
cassava19450.valid.m1
N
0.741
PRUPE_ppa003149mg
Prunus persica
PRUPE_ppa003149mg
N
0.741
SapurV1A.4599s0010
Salix purpurea
SapurV1A.4599s0010
N
0.735
SapurV1A.0041s0160
Salix purpurea
SapurV1A.0041s0160
N
0.735
POPTR_0001s24850
Populus trichocarpa
POPTR_0001s24850
N
0.735
SapurV1A.0040s0470
Salix purpurea
SapurV1A.0040s0470
N
0.730
evm.TU.supercontig_81.124
Carica papaya
evm.TU.supercontig_81.124
N
0.724
28650.m000191
Ricinus communis
28650.m000191
N
0.716