Carubv10007218m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10007218m.g T228298_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10007218m Homeodomain 62 103

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0012s03550 Populus trichocarpa POPTR_0012s03550 N 0.839
OLONG_008306 Oryza longistaminata OLONG_008306 N 0.839
mgf006959m Mimulus guttatus mgf006959m N 0.839
GRMZM2G004334 Zea mays GRMZM2G004334 N 0.839
cassava13400.valid.m1 Manihot esculenta cassava13400.valid.m1 N 0.837
GRMZM2G123140 Zea mays GRMZM2G123140 I 0.830
Traes_1DL_9FB53E48A Triticum aestivum Traes_1DL_9FB53E48A N 0.830
PGSC0003DMG400013263 Solanum tuberosum PGSC0003DMG400013263 N 0.820
PDK_20s1347391g002 Phoenix dactylifera PDK_20s1347391g002 N 0.818
Pavir.Fa02028 Panicum virgatum Pavir.Fa02028 N 0.818
MDP0000690933 Malus domestica MDP0000690933 N 0.818
gene23926-v1.0-hybrid Fragaria vesca gene23926-v1.0-hybrid N 0.818
GSMUA_Achr3G23090_001 Musa acuminata GSMUA_Achr3G23090_001 N 0.818
Ca_08015 Cicer arietinum Ca_08015 N 0.813
Traes_6BL_4301B7F15 Triticum aestivum Traes_6BL_4301B7F15 N 0.806
OLONG_012459 Oryza longistaminata OLONG_012459 N 0.805
TCM_016582 Theobroma cacao TCM_016582 I 0.798
Gorai.003G184900 Gossypium raimondii Gorai.003G184900 I 0.798
PDK_20s1410161g001 Phoenix dactylifera PDK_20s1410161g001 N 0.783
Traes_6DL_D722B6E13 Triticum aestivum Traes_6DL_D722B6E13 N 0.783
LjT36I04.40.nd Lotus japonicus LjT36I04.40.nd N 0.783
BRADI3G23370 Brachypodium distachyon BRADI3G23370 N 0.782
GLYMA08G09430 Glycine max GLYMA08G09430 N 0.765
gene25833-v1.0-hybrid Fragaria vesca gene25833-v1.0-hybrid N 0.765
BRADI2G50510 Brachypodium distachyon BRADI2G50510 N 0.765
PGSC0003DMG400019030 Solanum tuberosum PGSC0003DMG400019030 N 0.762
OLONG_017944 Oryza longistaminata OLONG_017944 N 0.762
OS01G0788800 Oryza sativa OS01G0788800 N 0.762
F775_10961 Aegilops tauschii F775_10961 N 0.742
Traes_3AL_F42853DA5 Triticum aestivum Traes_3AL_F42853DA5 N 0.731
OMERI08G08060 Oryza meridionalis OMERI08G08060 N 0.727
Ca_19697 Cicer arietinum Ca_19697 N 0.722
Bo1g131210 Brassica oleracea Bo1g131210 N 0.715
TRIUR3_32002 Triticum urartu TRIUR3_32002 N 0.708
TRAES3BF096700010CFD_g Triticum aestivum TRAES3BF096700010CFD_g N 0.695
TRIUR3_29318 Triticum urartu TRIUR3_29318 N 0.687
Ocbimv22024994m.g Octopus bimaculoides Ocbimv22024994m.g N 0.683
TRAES3BF096700040CFD_g Triticum aestivum TRAES3BF096700040CFD_g N 0.679
augustus_masked-nMf.1.1.scaf10580-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf10580-processed-gene-0.0 N 0.678
ACOC_0000334101 Angiostrongylus costaricensis ACOC_0000334101 N 0.674
Minc02159 Meloidogyne incognita Minc02159 N 0.674
ACAC_0000093601 Angiostrongylus cantonensis ACAC_0000093601 N 0.674
ENSOCUG00000013528 Oryctolagus cuniculus ENSOCUG00000013528 I 0.674
PGSC0003DMG400007775 Solanum tuberosum PGSC0003DMG400007775 N 0.673
GI23625 Drosophila mojavensis FBgn0146351 N 0.669
csin109617 Clonorchis sinensis csin109617 N 0.667
SMTD_0001030501 Schistosoma mattheei SMTD_0001030501 N 0.664
ANCCEY_10891 Ancylostoma ceylanicum ANCCEY_10891 N 0.662
ANCCAN_27026 Ancylostoma caninum ANCCAN_27026 N 0.662
TLX3 Taeniopygia guttata ENSTGUG00000014966 N 0.661
ENSPTRG00000017522 Pan troglodytes ENSPTRG00000017522 N 0.661
VAX1 Loxodonta africana ENSLAFG00000018107 N 0.660
nRc.2.0.1.g21365 Romanomermis culicivorax nRc.2.0.1.g21365 N 0.659
SINV22981 Solenopsis invicta SINV22981 N 0.655
scaffold61-EXSNAP2012.75 Pristionchus exspectatus scaffold61-EXSNAP2012.75 N 0.655
YQE_10731 Dendroctonus ponderosae YQE_10731 N 0.654
AEPI010666 Anopheles epiroticus AEPI010666 N 0.654
AQUA015309 Anopheles quadriannulatus AQUA015309 N 0.654
ENSSHAG00000009294 Sarcophilus harrisii ENSSHAG00000009294 I 0.648
PPA28666 Pristionchus pacificus PPA28666 N 0.647
ENSTRUG00000017602 Takifugu rubripes ENSTRUG00000017602 N 0.647
AMIN006246 Anopheles minimus AMIN006246 N 0.645
PPAI007203 Phlebotomus papatasi PPAI007203 N 0.645
LACBIDRAFT_243459 Laccaria bicolor LACBIDRAFT_243459 N 0.644
nRc.2.0.1.g08298 Romanomermis culicivorax nRc.2.0.1.g08298 N 0.641
LDEC017208 Leptinotarsa decemlineata LDEC017208 N 0.641
EMX1 Oryctolagus cuniculus ENSOCUG00000008208 N 0.641
HelroG192586 Helobdella robusta HelroG192586 N 0.641
PHUM118950 Pediculus humanus PHUM118950 N 0.641
AFAF006159 Anopheles farauti AFAF006159 I 0.640
CLEC004114 Cimex lectularius CLEC004114 N 0.639
SNAPOd2T00015975001 Oikopleura dioica SNAPOd2T00015975001 N 0.636
RPRC003713 Rhodnius prolixus RPRC003713 N 0.635
LDEC009173 Leptinotarsa decemlineata LDEC009173 N 0.635
nDi.2.2.2.g10664 Dirofilaria immitis nDi.2.2.2.g10664 I 0.635
BTMF_0001416601 Brugia timori BTMF_0001416601 N 0.635
PXEA_0003635301 Protopolystoma xenopodis PXEA_0003635301 N 0.635
SPER_0001142801 Spirometra erinaceieuropaei SPER_0001142801 I 0.635
TRE_0000385401 Trichobilharzia regenti TRE_0000385401 N 0.635
TCLT_0000655201 Thelazia callipaeda TCLT_0000655201 I 0.635
PPAI006607 Phlebotomus papatasi PPAI006607 I 0.635
PPAI004705 Phlebotomus papatasi PPAI004705 N 0.635
SMU15011671 Schmidtea mediterranea SMU15011671 I 0.635
Sjc_0085440 Schistosoma japonicum Sjc_0085440 N 0.635
nkx6-1 Xenopus tropicalis XB-GENE-483574 I 0.635
ACUA011088 Anopheles culicifacies ACUA011088 N 0.635
AMAM008009 Anopheles maculatus AMAM008009 N 0.635
AEPI002733 Anopheles epiroticus AEPI002733 N 0.635
Cmyd_10007464 Chelonia mydas Cmyd_10007464 I 0.635
YQE_12889 Dendroctonus ponderosae YQE_12889 N 0.635
ISCW010454 Ixodes scapularis ISCW010454 N 0.635
ISCW012145 Ixodes scapularis ISCW012145 N 0.635
KGM_17085 Danaus plexippus KGM_17085 N 0.635
MCINX004708 Melitaea cinxia MCINX004708 N 0.635
ENSXMAG00000003902 Xiphophorus maculatus ENSXMAG00000003902 I 0.635
tlx2 Danio rerio ENSDARG00000011273 I 0.635
NKX6-1 Homo sapiens ENSG00000163623 D 0.635
Tlx1 Mus musculus ENSMUSG00000025215 I 0.635
ENSOARG00000003161 Ovis aries ENSOARG00000003161 I 0.635
VAX2 Sus scrofa ENSSSCG00000008318 N 0.635
MESCA006388 Megaselia scalaris MESCA006388 N 0.635
ENSTNIG00000016273 Tetraodon nigroviridis ENSTNIG00000016273 I 0.635
ACYPI086517 Acyrthosiphon pisum ACYPI086517 N 0.635
ACEP22770 Atta cephalotes ACEP22770 N 0.635
PHUM359910 Pediculus humanus PHUM359910 N 0.635
PHUM359880 Pediculus humanus PHUM359880 N 0.635
LDEC016573 Leptinotarsa decemlineata LDEC016573 N 0.634
A_05714 Schistosoma haematobium A_05714 N 0.634
Smp_136900 Schistosoma mansoni Smp_136900 N 0.630
ENSPVAG00000007998 Pteropus vampyrus ENSPVAG00000007998 N 0.630
ENSOARG00000010209 Ovis aries ENSOARG00000010209 N 0.629
Tal_R011355 Tyto alba Tal_R011355 N 0.627
TRIUR3_33331 Triticum urartu TRIUR3_33331 N 0.626
SPU_022574 Strongylocentrotus purpuratus SPU_022574 N 0.626
M437DRAFT_40473 Aureobasidium melanogenum M437DRAFT_40473 N 0.625
ACUA020431 Anopheles culicifacies ACUA020431 N 0.625
AEPI010384 Anopheles epiroticus AEPI010384 N 0.625
ACHR008505 Anopheles christyi ACHR008505 N 0.625
GSTUM_00004451001 Tuber melanosporum GSTUM_00004451001 I 0.623
K443DRAFT_111002 Laccaria amethystina K443DRAFT_111002 N 0.623
ASTEI00742 Anopheles stephensi ASTEI00742 N 0.622
AFUN002980 Anopheles funestus AFUN002980 N 0.622
ENSCJAG00000004205 Callithrix jacchus ENSCJAG00000004205 I 0.622
ASIM_0001450801 Anisakis simplex ASIM_0001450801 N 0.621
ASIM_0000060401 Anisakis simplex ASIM_0000060401 N 0.621
maker-nMf.1.1.scaf28435-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf28435-augustus-gene-0.3 N 0.619
F775_07305 Aegilops tauschii F775_07305 N 0.619
AATE009299 Anopheles atroparvus AATE009299 I 0.617
Traes_1AS_CA75913B6 Triticum aestivum Traes_1AS_CA75913B6 N 0.617
M378DRAFT_56764 Amanita muscaria M378DRAFT_56764 N 0.617
ENSSHAG00000011988 Sarcophilus harrisii ENSSHAG00000011988 I 0.616
Ca_23643 Cicer arietinum Ca_23643 N 0.615
NECAME_08983 Necator americanus NECAME_08983 N 0.615
ANCCAN_19464 Ancylostoma caninum ANCCAN_19464 N 0.614
HMEL006102 Heliconius melpomene HMEL006102 N 0.614
TLX2 Ochotona princeps ENSOPRG00000014031 N 0.614
THITE_2107332 Thielavia terrestris THITE_2107332 I 0.613
NECAME_04746 Necator americanus NECAME_04746 N 0.612
Ogr19002 Ophisaurus gracilis Ogr19002 N 0.612
ENSGALG00000020423 Gallus gallus ENSGALG00000020423 N 0.612
ANCDUO_16102 Ancylostoma duodenale ANCDUO_16102 N 0.612
BGIBMGA010052 Bombyx mori BGIBMGA010052 N 0.612
DICVIV_02944 Dictyocaulus viviparus DICVIV_02944 N 0.612
GRMZM2G381748 Zea mays GRMZM2G381748 N 0.612
Eucgr.D00184 Eucalyptus grandis Eucgr.D00184 I 0.611
SCUD_0000383301 Schistosoma curassoni SCUD_0000383301 N 0.611
SapurV1A.0059s0380 Salix purpurea SapurV1A.0059s0380 N 0.610
OBART02G26000 Oryza barthii OBART02G26000 I 0.609
Traes_2AL_BFB0C6D4C Triticum aestivum Traes_2AL_BFB0C6D4C I 0.609
Traes_2AL_AAEBFA9CC Triticum aestivum Traes_2AL_AAEBFA9CC N 0.609
EEL_0000533501 Elaeophora elaphi EEL_0000533501 N 0.609
Traes_1DS_AAEBFA9CC Triticum aestivum Traes_1DS_AAEBFA9CC N 0.609
ECPE_0000357901 Echinostoma caproni ECPE_0000357901 N 0.609
OS04G0541700 Oryza sativa OS04G0541700 I 0.609
BGLB006778 Biomphalaria glabrata BGLB006778 N 0.608
TCNE_0000505101 Toxocara canis TCNE_0000505101 N 0.608
GPUH_0000797801 Gongylonema pulchrum GPUH_0000797801 N 0.608
DICVIV_01479 Dictyocaulus viviparus DICVIV_01479 N 0.607
ENSFCAG00000025984 Felis catus ENSFCAG00000025984 N 0.607
hoxc12a Gasterosteus aculeatus ENSGACG00000009391 N 0.607
Alligator_sinensis_CCG004967.1 Alligator sinensis Alligator_sinensis_CCG004967.1 N 0.607
ANCCAN_14745 Ancylostoma caninum ANCCAN_14745 N 0.607
ENSCSAG00000006765 Chlorocebus sabaeus ENSCSAG00000006765 N 0.607
chr5.CM0095.320.nd Lotus japonicus chr5.CM0095.320.nd N 0.607
ANCCAN_11756 Ancylostoma caninum ANCCAN_11756 N 0.606
ENSECAG00000002506 Equus caballus ENSECAG00000002506 I 0.606
HMX2 Felis catus ENSFCAG00000023440 N 0.606
BTMF_0000546301 Brugia timori BTMF_0000546301 N 0.604
LOC100912608 Rattus norvegicus ENSRNOG00000050252 I 0.604
SPER_0001728701 Spirometra erinaceieuropaei SPER_0001728701 N 0.604
F775_01938 Aegilops tauschii F775_01938 N 0.603
DME_0000044501 Dracunculus medinensis DME_0000044501 N 0.602
Bm8478 Brugia malayi Bm8478 N 0.601
BGIBMGA006390 Bombyx mori BGIBMGA006390 I 0.601
SMRZ_0000903001 Schistosoma margrebowiei SMRZ_0000903001 N 0.601
SPER_0002932401 Spirometra erinaceieuropaei SPER_0002932401 N 0.601
T265_14387 Opisthorchis viverrini T265_14387 N 0.601
SROB_0001009601 Schistosoma rodhaini SROB_0001009601 N 0.601
SBAD_0000495201 Soboliphyme baturini SBAD_0000495201 N 0.601
HNAJ_0000607701 Hymenolepis nana HNAJ_0000607701 N 0.601
ENSACAG00000027662 Anolis carolinensis ENSACAG00000027662 I 0.601
ENSACAG00000005787 Anolis carolinensis ENSACAG00000005787 N 0.601
ENSACAG00000000961 Anolis carolinensis ENSACAG00000000961 N 0.601
CJA40511 Caenorhabditis japonica CJA40511 I 0.601
CPIJ001378 Culex quinquefasciatus CPIJ001378 N 0.601
NKX6-3 Canis familiaris ENSCAFG00000005710 N 0.601
ENSOANG00000003475 Ornithorhynchus anatinus ENSOANG00000003475 I 0.601
LCUP008695 Lucilia cuprina LCUP008695 N 0.601
CLEC002615 Cimex lectularius CLEC002615 N 0.601
NKX6-3 Tursiops truncatus ENSTTRG00000003567 N 0.601
HOXB2 Pan troglodytes ENSPTRG00000009352 I 0.601
hoxb2.S Xenopus laevis XB-GENE-478530 I 0.601
ENSPANG00000014739 Papio anubis ENSPANG00000014739 N 0.601
ENSPPYG00000018545 Pongo abelii ENSPPYG00000018545 N 0.601
Tal_R008067 Tyto alba Tal_R008067 I 0.601
Cmyd_10012338 Chelonia mydas Cmyd_10012338 N 0.601
PHUM265030 Pediculus humanus PHUM265030 I 0.601
PPA04715 Pristionchus pacificus PPA04715 N 0.601
OLONG_017897 Oryza longistaminata OLONG_017897 I 0.601
LOAG_07462 Loa loa LOAG_07462 N 0.601
CpipJ_CPIJ001378 Culex pipiens CpipJ_CPIJ001378 N 0.601
KGM_21794 Danaus plexippus KGM_21794 I 0.601
AALB008451 Anopheles albimanus AALB008451 N 0.601
ENSPCAG00000005898 Procavia capensis ENSPCAG00000005898 N 0.601
AARA004444 Anopheles arabiensis AARA004444 N 0.601
AMEM007254 Anopheles merus AMEM007254 N 0.601
AMIN002696 Anopheles minimus AMIN002696 N 0.601
AQUA009533 Anopheles quadriannulatus AQUA009533 N 0.601
NKX6-3 Homo sapiens ENSG00000165066 D 0.601
ENSMEUG00000015794 Macropus eugenii ENSMEUG00000015794 I 0.601
AMEM011598 Anopheles merus AMEM011598 N 0.601
POPTR_0003s14700 Populus trichocarpa POPTR_0003s14700 N 0.601
ENSMMUG00000014725 Macaca mulatta ENSMMUG00000014725 N 0.601
ADIR006385 Anopheles dirus ADIR006385 N 0.601
nOo.2.0.1.g12002 Onchocerca ochengi nOo.2.0.1.g12002 N 0.600
LOAG_18696 Loa loa LOAG_18696 N 0.600
Cagra.1511s0010 Capsella grandiflora Cagra.1511s0010 N 0.600
Hba_10254 Heterorhabditis bacteriophora Hba_10254 N 0.600
HHAL004742-PA Halyomorpha halys HHAL004742-PA N 0.600
ANCCAN_23849 Ancylostoma caninum ANCCAN_23849 N 0.600
TRAES3BF096700070CFD_g Triticum aestivum TRAES3BF096700070CFD_g N 0.599
SVUK_0001081801 Strongylus vulgaris SVUK_0001081801 N 0.599
ANCCAN_18983 Ancylostoma caninum ANCCAN_18983 N 0.599
ANCCEY_01003 Ancylostoma ceylanicum ANCCEY_01003 I 0.599
ANCCEY_10591 Ancylostoma ceylanicum ANCCEY_10591 N 0.599
ANCDUO_04800 Ancylostoma duodenale ANCDUO_04800 N 0.599
HPBE_0002651601 Heligmosomoides bakeri HPBE_0002651601 N 0.599
AMAM004568 Anopheles maculatus AMAM004568 N 0.599
ISCW012461 Ixodes scapularis ISCW012461 N 0.599
NECAME_11765 Necator americanus NECAME_11765 N 0.599
ANCCAN_04049 Ancylostoma caninum ANCCAN_04049 I 0.599