gene25833-v1.0-hybrid (Fragaria vesca)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gene25833-v1.0-hybrid T228635_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna25833.1-v1.0-hybrid Homeodomain 260 308

Links

Other Homeodomain family TFs
Other Fragaria vesca TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI2G50510 Brachypodium distachyon BRADI2G50510 N 0.804
mgf006959m Mimulus guttatus mgf006959m N 0.776
POPTR_0012s03550 Populus trichocarpa POPTR_0012s03550 N 0.776
OLONG_008306 Oryza longistaminata OLONG_008306 N 0.776
GRMZM2G004334 Zea mays GRMZM2G004334 N 0.776
cassava13400.valid.m1 Manihot esculenta cassava13400.valid.m1 N 0.774
Traes_1DL_9FB53E48A Triticum aestivum Traes_1DL_9FB53E48A N 0.767
GRMZM2G123140 Zea mays GRMZM2G123140 I 0.767
MDP0000690933 Malus domestica MDP0000690933 N 0.767
Carubv10007218m.g Capsella rubella Carubv10007218m.g N 0.765
OLONG_012459 Oryza longistaminata OLONG_012459 N 0.754
Traes_6BL_4301B7F15 Triticum aestivum Traes_6BL_4301B7F15 N 0.742
PGSC0003DMG400013263 Solanum tuberosum PGSC0003DMG400013263 N 0.736
TCM_016582 Theobroma cacao TCM_016582 I 0.734
GSMUA_Achr3G23090_001 Musa acuminata GSMUA_Achr3G23090_001 N 0.734
Pavir.Fa02028 Panicum virgatum Pavir.Fa02028 N 0.734
Gorai.003G184900 Gossypium raimondii Gorai.003G184900 I 0.734
gene23926-v1.0-hybrid Fragaria vesca gene23926-v1.0-hybrid N 0.734
PDK_20s1347391g002 Phoenix dactylifera PDK_20s1347391g002 N 0.734
PDK_20s1410161g001 Phoenix dactylifera PDK_20s1410161g001 N 0.732
Traes_6DL_D722B6E13 Triticum aestivum Traes_6DL_D722B6E13 N 0.732
BRADI3G23370 Brachypodium distachyon BRADI3G23370 N 0.732
LjT36I04.40.nd Lotus japonicus LjT36I04.40.nd N 0.732
PGSC0003DMG400019030 Solanum tuberosum PGSC0003DMG400019030 N 0.726
Ca_08015 Cicer arietinum Ca_08015 N 0.723
Traes_3AL_F42853DA5 Triticum aestivum Traes_3AL_F42853DA5 N 0.695
OS01G0788800 Oryza sativa OS01G0788800 N 0.690
F775_10961 Aegilops tauschii F775_10961 N 0.690
OLONG_017944 Oryza longistaminata OLONG_017944 N 0.690
GLYMA08G09430 Glycine max GLYMA08G09430 N 0.685
Bo1g131210 Brassica oleracea Bo1g131210 N 0.663
OMERI08G08060 Oryza meridionalis OMERI08G08060 N 0.663
Ca_19697 Cicer arietinum Ca_19697 N 0.645
TRIUR3_32002 Triticum urartu TRIUR3_32002 N 0.635
F775_07305 Aegilops tauschii F775_07305 N 0.634
ENSOCUG00000013528 Oryctolagus cuniculus ENSOCUG00000013528 I 0.634
Traes_1AS_CA75913B6 Triticum aestivum Traes_1AS_CA75913B6 N 0.632
ACHR008505 Anopheles christyi ACHR008505 N 0.632
AEPI010384 Anopheles epiroticus AEPI010384 N 0.632
ACUA020431 Anopheles culicifacies ACUA020431 N 0.632
Ocbimv22024994m.g Octopus bimaculoides Ocbimv22024994m.g N 0.631
ASIM_0000060401 Anisakis simplex ASIM_0000060401 N 0.631
ASIM_0001450801 Anisakis simplex ASIM_0001450801 N 0.631
maker-nMf.1.1.scaf28435-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf28435-augustus-gene-0.3 N 0.626
augustus_masked-nMf.1.1.scaf10580-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf10580-processed-gene-0.0 N 0.626
Traes_1DS_AAEBFA9CC Triticum aestivum Traes_1DS_AAEBFA9CC N 0.625
Traes_2AL_AAEBFA9CC Triticum aestivum Traes_2AL_AAEBFA9CC N 0.625
TRAES3BF096700010CFD_g Triticum aestivum TRAES3BF096700010CFD_g N 0.622
PGSC0003DMG400007775 Solanum tuberosum PGSC0003DMG400007775 N 0.622
GI23625 Drosophila mojavensis FBgn0146351 N 0.617
csin109617 Clonorchis sinensis csin109617 N 0.615
TRIUR3_29318 Triticum urartu TRIUR3_29318 N 0.614
LOAG_18696 Loa loa LOAG_18696 N 0.611
SMTD_0001030501 Schistosoma mattheei SMTD_0001030501 N 0.611
nOo.2.0.1.g12002 Onchocerca ochengi nOo.2.0.1.g12002 N 0.611
ANCCAN_23849 Ancylostoma caninum ANCCAN_23849 N 0.609
ANCCEY_10891 Ancylostoma ceylanicum ANCCEY_10891 N 0.609
ACOC_0000334101 Angiostrongylus costaricensis ACOC_0000334101 N 0.609
ANCCAN_27026 Ancylostoma caninum ANCCAN_27026 N 0.609
Minc02159 Meloidogyne incognita Minc02159 N 0.609
VAX1 Loxodonta africana ENSLAFG00000018107 N 0.609
ENSPTRG00000017522 Pan troglodytes ENSPTRG00000017522 N 0.609
ACAC_0000093601 Angiostrongylus cantonensis ACAC_0000093601 N 0.609
TLX3 Taeniopygia guttata ENSTGUG00000014966 N 0.609
NECAME_08983 Necator americanus NECAME_08983 N 0.609
nRc.2.0.1.g21365 Romanomermis culicivorax nRc.2.0.1.g21365 N 0.607
TRAES3BF096700040CFD_g Triticum aestivum TRAES3BF096700040CFD_g N 0.606
scaffold61-EXSNAP2012.75 Pristionchus exspectatus scaffold61-EXSNAP2012.75 N 0.603
YQE_10731 Dendroctonus ponderosae YQE_10731 N 0.603
SINV22981 Solenopsis invicta SINV22981 N 0.603
T265_10172 Opisthorchis viverrini T265_10172 N 0.602
AEPI010666 Anopheles epiroticus AEPI010666 N 0.602
AQUA015309 Anopheles quadriannulatus AQUA015309 N 0.602
BGLB006778 Biomphalaria glabrata BGLB006778 N 0.601
e_gw.11.656.1 Branchiostoma floridae e_gw.11.656.1 N 0.599