GPLIN_000275800 (Globodera pallida)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 GPLIN_000275800 T234021_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CBG24578
M02065_2.00 		Caenorhabditis briggsae
NNNTGACAKSTN
NASMTGTCANNN		 PBM
Weirauch et al.(2014)
pTH6524 		0.707 0.922
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.628 0.608
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.628 0.608
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.628 0.608
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.628 0.608
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.627 0.588
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_000275800 Homeodomain 479 532

Links

Other Homeodomain family TFs
Other Globodera pallida TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
unc-62 Caenorhabditis elegans WBGene00006796 D 0.707
ASU_10550 Ascaris suum ASU_10550 I 0.707
CRE18960 Caenorhabditis remanei CRE18960 I 0.707
XP_002647234.1 Caenorhabditis briggsae XP_002647234.1 I 0.707
CJA02489 Caenorhabditis japonica CJA02489 I 0.707
CBG24578 Caenorhabditis briggsae CBG24578 D 0.707
SVE_0999800 Strongyloides venezuelensis SVE_0999800 I 0.695
SPAL_0001594500 Strongyloides papillosus SPAL_0001594500 I 0.695
L892_g28686 Steinernema scapterisci L892_g28686 I 0.695
L893_g8903 Steinernema glaseri L893_g8903 I 0.695
L596_g16822 Steinernema carpocapsae L596_g16822 I 0.695
PTRK_0001375800 Parastrongyloides trichosuri PTRK_0001375800 I 0.695
SSTP_0001175600 Strongyloides stercoralis SSTP_0001175600 I 0.695
nDi.2.2.2.g04955 Dirofilaria immitis nDi.2.2.2.g04955 I 0.671
BTMF_0000901301 Brugia timori BTMF_0000901301 I 0.671
Bm10123 Brugia malayi Bm10123 I 0.671
WBGene00242324 Onchocerca volvulus WBGene00242324 I 0.671
nAv.1.0.1.g05377 Acanthocheilonema viteae nAv.1.0.1.g05377 I 0.663
nLs.2.1.2.g05683 Litomosoides sigmodontis nLs.2.1.2.g05683 I 0.663
MhA1_Contig274.frz3.gene11 Meloidogyne hapla MhA1_Contig274.frz3.gene11 I 0.648
SMUV_0000922601 Syphacia muris SMUV_0000922601 I 0.645
SMU15027772 Schmidtea mediterranea SMU15027772 I 0.642
nRc.2.0.1.g39805 Romanomermis culicivorax nRc.2.0.1.g39805 I 0.636
ENSLOCG00000014306 Lepisosteus oculatus ENSLOCG00000014306 I 0.636
ASIM_0001141701 Anisakis simplex ASIM_0001141701 I 0.630
ENSACAG00000001251 Anolis carolinensis ENSACAG00000001251 I 0.629
SMRZ_0002528201 Schistosoma margrebowiei SMRZ_0002528201 I 0.628
Sjc_0088150 Schistosoma japonicum Sjc_0088150 I 0.628
ENSAMEG00000008199 Ailuropoda melanoleuca ENSAMEG00000008199 I 0.628
MEIS3 Canis familiaris ENSCAFG00000004161 I 0.628
Meis3 Dipodomys ordii ENSDORG00000008441 I 0.628
MEIS3 Pteropus vampyrus ENSPVAG00000004023 I 0.628
ENSEEUG00000006123 Erinaceus europaeus ENSEEUG00000006123 I 0.628
ENSETEG00000009874 Echinops telfairi ENSETEG00000009874 I 0.628
MEIS3 Procavia capensis ENSPCAG00000016512 I 0.628
MESCA005372 Megaselia scalaris MESCA005372 I 0.628
MEIS3 Pan troglodytes ENSPTRG00000011208 I 0.628
ENSTGUG00000002359 Taeniopygia guttata ENSTGUG00000002359 I 0.628
ENSNLEG00000003031 Nomascus leucogenys ENSNLEG00000003031 I 0.628
Smp_147790 Schistosoma mansoni Smp_147790 I 0.628
MEIS3 Homo sapiens ENSG00000105419 D 0.628
Q5EVH4_OIKDI Oikopleura dioica Q5EVH4_OIKDI D 0.627
MEIS3 Tursiops truncatus ENSTTRG00000002278 I 0.626
pknox1.2 Takifugu rubripes ENSTRUG00000001997 I 0.621
gw1.16.163.1 Naegleria gruberi gw1.16.163.1 I 0.621
OFLC_0001361601 Onchocerca flexuosa OFLC_0001361601 I 0.618
ASU_08145 Ascaris suum ASU_08145 I 0.618
fgenesh2_pg.scaffold_23000011 Monosiga brevicollis fgenesh2_pg.scaffold_23000011 I 0.614
Alligator_sinensis_CCG019581.1 Alligator sinensis Alligator_sinensis_CCG019581.1 I 0.609
HHAL007363-PA Halyomorpha halys HHAL007363-PA I 0.609
Alligator_sinensis_CCG016844.1 Alligator sinensis Alligator_sinensis_CCG016844.1 I 0.605
pknox1.2 Danio rerio ENSDARG00000036542 I 0.605
YQE_11947 Dendroctonus ponderosae YQE_11947 I 0.605
Myotis_brandtii_PKNOX1_10016558 Myotis brandtii Myotis_brandtii_PKNOX1_10016558 I 0.605
Ogr07386 Ophisaurus gracilis Ogr07386 I 0.605
Sjc_0049050 Schistosoma japonicum Sjc_0049050 I 0.605
30005.m001256 Ricinus communis 30005.m001256 N 0.603
orange1.1g001088m.g Citrus sinensis orange1.1g001088m.g N 0.603
pknox1.2 Oryzias latipes ENSORLG00000020833 I 0.602
ISCW011271 Ixodes scapularis ISCW011271 I 0.601
T265_13413 Opisthorchis viverrini T265_13413 I 0.601
NAPIS_ORF00602 Nosema apis NAPIS_ORF00602 I 0.601
HNAJ_0001355001 Hymenolepis nana HNAJ_0001355001 I 0.601
A_02308 Schistosoma haematobium A_02308 I 0.601
SCUD_0000036001 Schistosoma curassoni SCUD_0000036001 I 0.601
TsM_001128900 Taenia solium TsM_001128900 I 0.601
evm.TU.supercontig_8.11 Carica papaya evm.TU.supercontig_8.11 N 0.600