CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ogr12763
(
Ophisaurus gracilis
)
Homeodomain,POU
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
PF00157 (Pou)
IPR001356
IPR000327
Ogr12763
T238978_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Pou3f2
M00552_2.00
Mus musculus
NWWATBNN
NNVATWWN
PBM
Berger et al.(2008)
Pou3f2_2824
1.000
1.000
POU3F2
M03313_2.00
Homo sapiens
HWTGMATAWWTWA
TWAWWTATKCAWD
SELEX
Jolma et al.(2013)
POU3F2_1
1.000
1.000
POU3F2
M03314_2.00
Homo sapiens
WTATGYWAATKW
WMATTWRCATAW
SELEX
Jolma et al.(2013)
POU3F2_2
1.000
1.000
POU3F2
M05473_2.00
Homo sapiens
NTAATKAKATGCRN
NYGCATMTMATTAN
SELEX
Yin et al.(2017)
POU3F2_eDBD_HT-SELEX_1
1.000
1.000
POU3F2
M05474_2.00
Homo sapiens
NYGCATWMATTAN
NTAATKWATGCRN
SELEX
Yin et al.(2017)
POU3F2_eDBD_HT-SELEX_2
1.000
1.000
POU3F2
M05475_2.00
Homo sapiens
DHATGYGCATNH
DNATGCRCATDH
SELEX
Yin et al.(2017)
POU3F2_eDBD_HT-SELEX_3
1.000
1.000
POU3F2
M05476_2.00
Homo sapiens
DTATGCWAATKAV
BTMATTWGCATAH
SELEX
Yin et al.(2017)
POU3F2_eDBD_HT-SELEX_4
1.000
1.000
POU3F2
M05477_2.00
Homo sapiens
TAATKMNNNNNNTMATKA
TMATKANNNNNNKMATTA
SELEX
Yin et al.(2017)
POU3F2_eDBD_HT-SELEX_5
1.000
1.000
POU3F2
M09220_2.00
Homo sapiens
YHCATKMMWWWBYMWNN
NNWKRVWWWKKMATGDR
Misc
Kulakovskiy et al.(2013)
PO3F2_HUMAN.H11MO.0.A
1.000
1.000
Pou3f2
M09228_2.00
Mus musculus
HWCATGMATATKYAWD
HWTRMATATKCATGWD
Misc
Kulakovskiy et al.(2013)
PO3F2_MOUSE.H11MO.0.A
1.000
1.000
POU3F2
M10843_2.00
Homo sapiens
NNCATBSDWAATVMRH
DYKBATTWHSVATGNN
Transfac
Matys et al.(2006)
V$BRN2_01
1.000
1.000
POU3F2
M10844_2.00
Homo sapiens
ATGMATWWATTCAT
ATGAATWWATKCAT
Transfac
Matys et al.(2006)
V$POU3F2_01
1.000
1.000
POU3F2
M10845_2.00
Homo sapiens
TTATGYTAAT
ATTARCATAA
Transfac
Matys et al.(2006)
V$POU3F2_02
1.000
1.000
POU3F2
M10846_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$POU3F2_Q2
1.000
1.000
POU3F2
M05478_2.00
Homo sapiens
NTAATGAKATGCGH
DCGCATMTCATTAN
SELEX
Yin et al.(2017)
POU3F2_eDBD_Methyl-HT-SELEX_1
1.000
1.000
POU3F2
M05479_2.00
Homo sapiens
RCGCATAAATTAN
NTAATTTATGCGY
SELEX
Yin et al.(2017)
POU3F2_eDBD_Methyl-HT-SELEX_2
1.000
1.000
POU3F2
M05480_2.00
Homo sapiens
DHATGCGCATDH
DHATGCGCATDH
SELEX
Yin et al.(2017)
POU3F2_eDBD_Methyl-HT-SELEX_3
1.000
1.000
POU3F2
M05481_2.00
Homo sapiens
WTATGCWAATKAG
CTMATTWGCATAW
SELEX
Yin et al.(2017)
POU3F2_eDBD_Methyl-HT-SELEX_4
1.000
1.000
POU3F2
M05482_2.00
Homo sapiens
TAATKANNNNNTAATKA
TMATTANNNNNTMATTA
SELEX
Yin et al.(2017)
POU3F2_eDBD_Methyl-HT-SELEX_5
1.000
1.000
For this family, TFs with SR scores >
0.993
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ogr12763
POU
110
181
PTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEAD
Ogr12763
Homeodomain
200
256
RKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKR
Links
Other
Homeodomain,POU
family TFs
Other
Ophisaurus gracilis
TFs
29 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSPPYG00000016860
Pongo abelii
ENSPPYG00000016860
I
1.000
POU3F2
Pan troglodytes
ENSPTRG00000029496
I
1.000
POU3F2
Procavia capensis
ENSPCAG00000008737
I
1.000
ENSPANG00000006100
Papio anubis
ENSPANG00000006100
I
1.000
Pou3f2
Mus musculus
ENSMUSG00000095139
D
1.000
POU3F2
Otolemur garnettii
ENSOGAG00000024248
I
1.000
Pou3f2
Rattus norvegicus
ENSRNOG00000006908
I
1.000
POU3F2
Sus scrofa
ENSSSCG00000004346
I
1.000
Pvit_09307
Pogona vitticeps
Pvit_09307
I
1.000
XP_002934918
Xenopus tropicalis
XP_002934918
I
1.000
Myotis_brandtii_Pou3f2_10025237
Myotis brandtii
Myotis_brandtii_Pou3f2_10025237
I
1.000
Cmyd_10012071
Chelonia mydas
Cmyd_10012071
I
1.000
Alligator_sinensis_CCG004860.1
Alligator sinensis
Alligator_sinensis_CCG004860.1
I
1.000
ENSMPUG00000001529
Mustela putorius furo
ENSMPUG00000001529
I
1.000
POU3F2
Monodelphis domestica
ENSMODG00000018122
I
1.000
ENSCJAG00000001286
Callithrix jacchus
ENSCJAG00000001286
I
1.000
ENSCPOG00000003168
Cavia porcellus
ENSCPOG00000003168
I
1.000
POU3F2
Canis familiaris
ENSCAFG00000029595
I
1.000
ENSBTAG00000024773
Bos taurus
ENSBTAG00000024773
I
1.000
POU3F2
Anolis carolinensis
ENSACAG00000023192
I
1.000
ENSAMEG00000011263
Ailuropoda melanoleuca
ENSAMEG00000011263
I
1.000
ENSCSAG00000018978
Chlorocebus sabaeus
ENSCSAG00000018978
I
1.000
POU3F2
Dasypus novemcinctus
ENSDNOG00000007219
I
1.000
POU3F2
Gorilla gorilla
ENSGGOG00000028066
I
1.000
POU3F2
Myotis lucifugus
ENSMLUG00000016141
I
1.000
POU3F2
Homo sapiens
ENSG00000184486
D
1.000
POU3F2
Echinops telfairi
ENSETEG00000020341
I
1.000
ENSECAG00000015143
Equus caballus
ENSECAG00000015143
I
1.000
ENSACAG00000008907
Anolis carolinensis
ENSACAG00000008907
I
1.000