estExt_fgenesh2_pg.C_420088 (Fragilariopsis cylindrus)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 estExt_fgenesh2_pg.C_420088 T242828_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSF1
M00060_2.00 		Saccharomyces cerevisiae
NNNTTCNNN
NNNGAANNN		 PBM
Badis et al.(2008)
HSF1_4530 		0.325 0.347
HSF1
M07489_2.00 		Saccharomyces cerevisiae
HVTTCCAT
ATGGAABD		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0319.1 		0.325 0.347
HSF1
M08577_2.00 		Saccharomyces cerevisiae
TTCTAGAA
TTCTAGAA		 Misc
DeBoer et al.(2011)
YGL073W_1461 		0.325 0.347
HSF1
M08578_2.00 		Saccharomyces cerevisiae
GAANNNNNWRGAA
TTCYWNNNNNTTC		 Misc
DeBoer et al.(2011)
YGL073W_411 		0.325 0.347
HSF1
M08579_2.00 		Saccharomyces cerevisiae
HVTTCCAT
ATGGAABD		 Misc
DeBoer et al.(2011)
YGL073W_476 		0.325 0.347
HSF1
M08580_2.00 		Saccharomyces cerevisiae
RGAABNTTCTRGAA
TTCYAGAANVTTCY		 Misc
DeBoer et al.(2011)
YGL073W_615 		0.325 0.347
HSF1
M10874_2.00 		Saccharomyces cerevisiae
RGAANRGAANRGAAN
NTTCYNTTCYNTTCY		 Transfac
Matys et al.(2006)
F$HSF_02 		0.325 0.347
HSF1
M10875_2.00 		Saccharomyces cerevisiae
RGAANNTTCYNTTCY
RGAANRGAANNTTCY		 Transfac
Matys et al.(2006)
F$HSF_03 		0.325 0.347
HSF1
M10876_2.00 		Saccharomyces cerevisiae
RGAANNTTCYRGAAN
NTTCYRGAANNTTCY		 Transfac
Matys et al.(2006)
F$HSF_04 		0.325 0.347
HSF1
M10877_2.00 		Saccharomyces cerevisiae
NTTCYNTTCYRGAAN
NTTCYRGAANRGAAN		 Transfac
Matys et al.(2006)
F$HSF_05 		0.325 0.347
HSF1
M10878_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$HSF_Q6 		0.325 0.347
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_420088 HSF 91 219

Links

Other HSF family TFs
Other Fragilariopsis cylindrus TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
e_gw1.7.780.1 Fragilariopsis cylindrus e_gw1.7.780.1 N 0.346
Phatr3_J43364 Phaeodactylum tricornutum Phatr3_J43364 N 0.335
7991_YGL073W Saccharomyces bayanus 7991_YGL073W I 0.333
gw1.1.2017.1 Fragilariopsis cylindrus gw1.1.2017.1 N 0.331
fgenesh2_pg.26_#_250 Fragilariopsis cylindrus fgenesh2_pg.26_#_250 N 0.328
e_gw1.12.279.1 Fragilariopsis cylindrus e_gw1.12.279.1 N 0.326
Thaps264346 Thalassiosira pseudonana Thaps264346 I 0.326
8607_YGL073W Saccharomyces paradoxus 8607_YGL073W I 0.325
HSF1 Saccharomyces cerevisiae YGL073W D 0.325
Thaps22570 Thalassiosira pseudonana Thaps22570 I 0.324
7859_YGL073W Saccharomyces mikatae 7859_YGL073W I 0.324
Phatr3_EG00322 Phaeodactylum tricornutum Phatr3_EG00322 N 0.324
Thaps264072 Thalassiosira pseudonana Thaps264072 N 0.324
SU7_1143 Saccharomyces arboricola SU7_1143 I 0.324
e_gw1.2.1757.1 Fragilariopsis cylindrus e_gw1.2.1757.1 N 0.324
Phatr3_J44586 Phaeodactylum tricornutum Phatr3_J44586 N 0.322
fgenesh2_pg.4_#_65 Fragilariopsis cylindrus fgenesh2_pg.4_#_65 N 0.322
Thaps9607 Thalassiosira pseudonana Thaps9607 N 0.322