CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSONIG00000006624
(
Oreochromis niloticus
)
IRF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00605 (IRF)
IPR001346
ENSONIG00000006624
T244272_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Irf9
M00173_2.00
Mus musculus
NNNRAAANN
NNTTTYNNN
PBM
Badis et al.(2009)
Isgf3g_2853
0.731
0.731
Irf9
M09240_2.00
Mus musculus
GAAABHGAAAYT
ARTTTCDVTTTC
Misc
Kulakovskiy et al.(2013)
IRF9_MOUSE.H11MO.0.C
0.731
0.731
IRF9
M02257_2.00
Ochotona princeps
DNYRAAAVND
HNBTTTYRNH
PBM
Weirauch et al.(2014)
pTH9337
0.702
0.702
IRF9
M02258_2.00
Sus scrofa
WNYGAAASY
RSTTTCRNW
PBM
Weirauch et al.(2014)
pTH9287
0.702
0.702
IRF8
M03335_2.00
Homo sapiens
HCGAAACYGAAACY
RGTTTCRGTTTCGD
SELEX
Jolma et al.(2013)
IRF8_1
0.702
0.702
IRF8
M03336_2.00
Homo sapiens
HCGAAACCGAAACT
AGTTTCGGTTTCGD
SELEX
Jolma et al.(2013)
IRF8_2
0.702
0.702
IRF8
M05541_2.00
Homo sapiens
NYGAAASYGAAASHN
NDSTTTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF8_eDBD_HT-SELEX
0.702
0.702
IRF8
M05543_2.00
Homo sapiens
NCGAAACYGAAACYN
NRGTTTCRGTTTCGN
SELEX
Yin et al.(2017)
IRF8_FL_HT-SELEX
0.702
0.702
IRF8
M09236_2.00
Homo sapiens
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN
Misc
Kulakovskiy et al.(2013)
IRF8_HUMAN.H11MO.0.B
0.702
0.702
Irf8
M09246_2.00
Mus musculus
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN
Misc
Kulakovskiy et al.(2013)
IRF8_MOUSE.H11MO.0.A
0.702
0.702
IRF8
M10890_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ICSBP_Q6
0.702
0.702
IRF8
M10891_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF8_Q6
0.702
0.702
IRF8
M05542_2.00
Homo sapiens
NYGAAASYGAAASYN
NRSTTTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF8_eDBD_Methyl-HT-SELEX
0.702
0.702
IRF8
M05544_2.00
Homo sapiens
NYGAAASYGAAACYD
HRGTTTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF8_FL_Methyl-HT-SELEX
0.702
0.702
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSONIP00000008369
IRF
11
115
RLRSWIVEQVSSGKYPGLVWDDEAKTMFRIPWKHAGKQDFRKDEDAAIFKAWAEFKGKLTDGGQDNPAAWKTRLRCALNKSPEFKEVMDRAQLDISEPYKVYRLV
ENSONIP00000008370
IRF
11
115
RLRSWIVEQVSSGKYPGLVWDDEAKTMFRIPWKHAGKQDFRKDEDAAIFKAWAEFKGKLTDGGQDNPAAWKTRLRCALNKSPEFKEVMDRAQLDISEPYKVYRLV
Links
Other
IRF
family TFs
Other
Oreochromis niloticus
TFs
71 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy