Bo5g137800 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo5g137800 T247988_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G10030
M01258_2.00
Arabidopsis thaliana
NRMCGTTAWNN

NNWTAACGKYN
PBM
Lambert et al.(2019)
pTH11538
0.960 0.920
AT3G10030
M06971_2.00
Arabidopsis thaliana
HRHCKCCGTTANND

HNNTAACGGMGDYD
Dap-seq
OMalley et al.(2016)
AT3G10030_col_a
0.960 0.920
AT3G10030
M06972_2.00
Arabidopsis thaliana
HWRHMKCCGTTAAHD

HDTTAACGGMKDYWD
Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a
0.960 0.920
PK04914.1
M01262_2.00
Cannabis sativa
DCCGTYAN

NTRACGGH
PBM
Lambert et al.(2019)
pTH10098
0.942 0.787
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g137800.1 MADF 159 241

Links

Other MADF family TFs
Other Brassica oleracea TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
3485_Multiple Saccharomyces paradoxus 3485_Multiple N 0.000
3838_YDL074C Saccharomyces bayanus 3838_YDL074C N 0.000
AACERI_AaceriAER074W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAER074W N 0.000
AGOS_AER074W Ashbya gossypii AGOS_AER074W N 0.000
BRE1 Saccharomyces cerevisiae YDL074C N 0.000
CAGL0D00638g Candida glabrata CAGL0D00638g N 0.000
Ecym_3250 Eremothecium cymbalariae Ecym_3250 N 0.000
Kpol_1055p70 Vanderwaltozyma polyspora Kpol_1055p70 N 0.000
SKUD_206218 Saccharomyces kudriavzevii SKUD_206218 N 0.000
SU7_0530 Saccharomyces arboricola SU7_0530 N 0.000
YALI0_B09559g Yarrowia lipolytica YALI0_B09559g N 0.000
ZBAI_08961 Zygosaccharomyces bailii ZBAI_08961 N 0.000
ZYRO0B12804g Zygosaccharomyces rouxii ZYRO0B12804g N 0.000