CBG08311 (Caenorhabditis briggsae)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 CBG08311 T248061_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CBG08311
M02267_2.00		 Caenorhabditis briggsae
RCGCGGAM
KTCCGCGY		 PBM
Weirauch et al.(2014)
pTH9393		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
madf-9
M02277_2.00 		Caenorhabditis elegans
VYGCGGAH
DTCCGCRB		 PBM
Weirauch et al.(2014)
pTH8333 		0.969 0.949
For this family, TFs with SR scores > 0.812 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02267_2.00 MADF 51 129

DNA Binding Domains

Protein ID Domain From To Sequence
CBG08311 MADF 55 133

Links

Other MADF family TFs
Other Caenorhabditis briggsae TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
madf-9 Caenorhabditis elegans WBGene00022608 D 0.969
CBN03210 Caenorhabditis brenneri CBN03210 I 0.969
CRE11120 Caenorhabditis remanei CRE11120 I 0.969
CJA11982 Caenorhabditis japonica CJA11982 I 0.969
CBN17693 Caenorhabditis brenneri CBN17693 I 0.969
HCOI00362100 Haemonchus contortus HCOI00362100 I 0.937
HCOI01732900 Haemonchus contortus HCOI01732900 I 0.937
TELCIR_18230 Teladorsagia circumcincta TELCIR_18230 I 0.937
HPLM_0002104601 Haemonchus placei HPLM_0002104601 I 0.937
OESDEN_02601 Oesophagostomum dentatum OESDEN_02601 I 0.931
DICVIV_09254 Dictyocaulus viviparus DICVIV_09254 I 0.931
OESDEN_17440 Oesophagostomum dentatum OESDEN_17440 I 0.931
HPBE_0002310201 Heligmosomoides bakeri HPBE_0002310201 I 0.930
ANCDUO_21217 Ancylostoma duodenale ANCDUO_21217 I 0.930
ACOC_0000053701 Angiostrongylus costaricensis ACOC_0000053701 I 0.930
ANCCAN_19661 Ancylostoma caninum ANCCAN_19661 I 0.930
ANCDUO_20588 Ancylostoma duodenale ANCDUO_20588 I 0.930
CGOC_0001115201 Cylicostephanus goldi CGOC_0001115201 I 0.903
scaffold190-EXSNAP2012.38 Pristionchus exspectatus scaffold190-EXSNAP2012.38 I 0.885
NBR_0000280301 Nippostrongylus brasiliensis NBR_0000280301 I 0.854