Cagra.1504s0056 (Capsella grandiflora)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cagra.1504s0056 T250606_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05550
M06978_2.00 		Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND		 Dap-seq
OMalley et al.(2016)
AT5G05550_col_a 		0.875 0.794
AT5G05550
M06979_2.00 		Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD		 Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a 		0.875 0.794
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1504s0056.1.p MADF 33 107

Links

Other MADF family TFs
Other Capsella grandiflora TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.923
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.878
AT5G05550 Arabidopsis thaliana AT5G05550 D 0.875
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.871
Bo5g136850 Brassica oleracea Bo5g136850 I 0.871
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.869
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.869
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.869
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.867
Bra034866 Brassica rapa Bra034866 I 0.866
Bra034165 Brassica rapa Bra034165 I 0.852
Aquca_039_00151 Aquilegia coerulea Aquca_039_00151 N 0.847
Bo9g177060 Brassica oleracea Bo9g177060 I 0.843
Bra009119 Brassica rapa Bra009119 I 0.843
Bostr.13129s0416 Boechera stricta Bostr.13129s0416 I 0.840
29814.m000741 Ricinus communis 29814.m000741 I 0.813