scaffold_301280.1 (Arabidopsis lyrata)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 scaffold_301280.1 T249779_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05550
M06978_2.00 		Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND		 Dap-seq
OMalley et al.(2016)
AT5G05550_col_a 		0.874 0.701
AT5G05550
M06979_2.00 		Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD		 Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a 		0.874 0.701
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_301280.1 MADF 37 109

Links

Other MADF family TFs
Other Arabidopsis lyrata TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.971
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.971
Bo5g136850 Brassica oleracea Bo5g136850 I 0.971
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.971
Bra034165 Brassica rapa Bra034165 I 0.943
Bo9g177060 Brassica oleracea Bo9g177060 I 0.936
Bra009119 Brassica rapa Bra009119 I 0.924
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.923
Bra034866 Brassica rapa Bra034866 I 0.922
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.905
MDP0000097759 Malus domestica MDP0000097759 N 0.905
29814.m000741 Ricinus communis 29814.m000741 I 0.897
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.896
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.896
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.896
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.893
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.891
Bostr.13129s0416 Boechera stricta Bostr.13129s0416 I 0.884
MDP0000943251 Malus domestica MDP0000943251 N 0.884
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.881
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.881
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.880
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.880
Si010246m.g Setaria italica Si010246m.g N 0.878
AT5G05550 Arabidopsis thaliana AT5G05550 D 0.874
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.871
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.870
Cagra.1504s0056 Capsella grandiflora Cagra.1504s0056 I 0.869
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.868
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.859
Sb06g017920 Sorghum bicolor Sb06g017920 N 0.857
GRMZM2G392168 Zea mays GRMZM2G392168 N 0.852
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.844
TCM_042467 Theobroma cacao TCM_042467 N 0.835
Traes_6AL_7A4395C60 Triticum aestivum Traes_6AL_7A4395C60 N 0.833
mgf006505m Mimulus guttatus mgf006505m I 0.823
mgf000047m Mimulus guttatus mgf000047m I 0.818
Traes_6DL_C27CEED76 Triticum aestivum Traes_6DL_C27CEED76 N 0.817
Lus10020652.g Linum usitatissimum Lus10020652.g I 0.816
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.812