Lus10020652.g (Linum usitatissimum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Lus10020652.g T250739_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.852 0.587
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10020652 MADF 85 169

Links

Other MADF family TFs
Other Linum usitatissimum TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.912
MDP0000255104 Malus domestica MDP0000255104 I 0.906
MDP0000281471 Malus domestica MDP0000281471 I 0.906
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.901
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.900
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.898
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.895
Pm013209 Prunus mume Pm013209 I 0.895
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.888
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.885
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.880
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.865
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.865
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.865
Cla015773 Citrullus lanatus Cla015773 I 0.865
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.864
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.864
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.852
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.852
ASIL2 Arabidopsis thaliana AT3G14180 D 0.852
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.852
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.852
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.852
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.851
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.841
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.831
29814.m000741 Ricinus communis 29814.m000741 I 0.828
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.827
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.824
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.821
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.821
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.817
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.816
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.816
Bo5g136850 Brassica oleracea Bo5g136850 I 0.816
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.816
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.816
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.816