Cucsa.359990 (Cucumis sativus)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cucsa.359990 T250489_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.892 0.789
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.359990.1 MADF 83 160

Links

Other MADF family TFs
Other Cucumis sativus TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla015773 Citrullus lanatus Cla015773 I 0.971
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.961
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.961
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.958
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.958
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.958
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.956
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.945
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.933
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.929
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.929
MDP0000281471 Malus domestica MDP0000281471 I 0.926
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.926
MDP0000255104 Malus domestica MDP0000255104 I 0.926
Pm013209 Prunus mume Pm013209 I 0.926
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.924
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.920
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.917
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.916
TCM_029209 Theobroma cacao TCM_029209 I 0.908
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.905
29727.m000472 Ricinus communis 29727.m000472 I 0.900
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.900
mgf006505m Mimulus guttatus mgf006505m I 0.893
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.892
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.892
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.892
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.892
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.892
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.892
ASIL2 Arabidopsis thaliana AT3G14180 D 0.892
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.888
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.884
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.884
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.880
PK22475.1 Cannabis sativa PK22475.1 N 0.878
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.873
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.873
TCM_042467 Theobroma cacao TCM_042467 N 0.865
Lus10020652.g Linum usitatissimum Lus10020652.g I 0.865
Bo1g134590 Brassica oleracea Bo1g134590 I 0.863
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.859
AMTR_s00007p00263040 Amborella trichopoda AMTR_s00007p00263040 N 0.858
mgf000047m Mimulus guttatus mgf000047m I 0.856
29814.m000741 Ricinus communis 29814.m000741 I 0.855
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.855
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.855
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.854
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.849
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.849
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.848
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.844
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.844
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.844
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.844
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.843
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.843
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.842
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.842
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.840
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.836
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.836
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.829
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.827
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.827
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.823
MDP0000097759 Malus domestica MDP0000097759 N 0.822
Bra014370 Brassica rapa Bra014370 I 0.822
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.820
Bra037960 Brassica rapa Bra037960 I 0.816