AMTR_s00007p00020440 (Amborella trichopoda)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AMTR_s00007p00020440 T247839_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.915 0.662
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN05191 MADF 59 140

Links

Other MADF family TFs
Other Amborella trichopoda TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.956
MDP0000281471 Malus domestica MDP0000281471 I 0.951
MDP0000255104 Malus domestica MDP0000255104 I 0.951
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.948
Pm013209 Prunus mume Pm013209 I 0.945
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.945
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.945
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.936
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.933
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.926
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.926
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.925
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.925
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.917
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.916
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.916
ASIL2 Arabidopsis thaliana AT3G14180 D 0.915
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.915
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.913
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.913
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.913
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.913
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.911
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.905
Cla015773 Citrullus lanatus Cla015773 I 0.905
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.904
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.904
29814.m000741 Ricinus communis 29814.m000741 I 0.900
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.899
TCM_029209 Theobroma cacao TCM_029209 I 0.896
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.896
29727.m000472 Ricinus communis 29727.m000472 I 0.896
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.896
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.893
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.893
MDP0000097759 Malus domestica MDP0000097759 N 0.892
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.891
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.889
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.889
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.889
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.889
Lus10020652.g Linum usitatissimum Lus10020652.g I 0.888
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.886
PK22475.1 Cannabis sativa PK22475.1 N 0.885
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.885
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.883
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.880
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.879
MDP0000943251 Malus domestica MDP0000943251 N 0.879
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.878
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.877
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.874
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.869
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.868
Bo3g065930 Brassica oleracea Bo3g065930 I 0.867
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.864
mgf006505m Mimulus guttatus mgf006505m I 0.862
TCM_042467 Theobroma cacao TCM_042467 N 0.860
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.856
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.852
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.849
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.849
AMTR_s00007p00263040 Amborella trichopoda AMTR_s00007p00263040 N 0.839
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.837
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.835
Bra014370 Brassica rapa Bra014370 I 0.835
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.834
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.834
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.831
AMTR_s00021p00065350 Amborella trichopoda AMTR_s00021p00065350 I 0.824
Bra037960 Brassica rapa Bra037960 I 0.823
Bo6g050870 Brassica oleracea Bo6g050870 I 0.819
mgf000047m Mimulus guttatus mgf000047m I 0.818
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.813