Solyc03g122030.1 (Solanum lycopersicum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Solyc03g122030.1 T249885_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.874 0.778
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc03g122030.1.1 MADF 76 154

Links

Other MADF family TFs
Other Solanum lycopersicum TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.962
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.958
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.958
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.957
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.957
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.953
Cla015773 Citrullus lanatus Cla015773 I 0.945
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.945
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.944
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.938
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.935
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.934
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.933
Pm013209 Prunus mume Pm013209 I 0.933
MDP0000281471 Malus domestica MDP0000281471 I 0.932
MDP0000255104 Malus domestica MDP0000255104 I 0.932
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.921
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.915
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.911
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.902
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.900
29727.m000472 Ricinus communis 29727.m000472 I 0.900
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.900
TCM_029209 Theobroma cacao TCM_029209 I 0.898
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.895
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.895
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.895
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.895
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.893
PK22475.1 Cannabis sativa PK22475.1 N 0.886
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.882
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.881
ASIL2 Arabidopsis thaliana AT3G14180 D 0.874
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.874
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.874
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.874
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.874
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.874
TCM_042467 Theobroma cacao TCM_042467 N 0.873
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.866
mgf006505m Mimulus guttatus mgf006505m I 0.863
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.859
AMTR_s00007p00263040 Amborella trichopoda AMTR_s00007p00263040 N 0.855
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.851
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.851
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.847
Lus10020652.g Linum usitatissimum Lus10020652.g I 0.841
Bo1g134590 Brassica oleracea Bo1g134590 I 0.840
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.836
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.836
MDP0000097759 Malus domestica MDP0000097759 N 0.835
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.833
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.830
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.830
29814.m000741 Ricinus communis 29814.m000741 I 0.829
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.822
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.822
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.819
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.817
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.817
MDP0000943251 Malus domestica MDP0000943251 N 0.817
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.814
mgf000047m Mimulus guttatus mgf000047m I 0.813