Carubv10015798m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10015798m.g T250628_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL1
M02264_2.00 		Arabidopsis thaliana
NNDHCGDHNN
NNDHCGDHNN		 PBM
Weirauch et al.(2014)
pTH7464 		0.843 0.562
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.829 0.630
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015798m MADF 39 117

Links

Other MADF family TFs
Other Capsella rubella TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.966
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.890
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.890
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.878
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.878
Bo6g050870 Brassica oleracea Bo6g050870 I 0.875
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.867
Bra014370 Brassica rapa Bra014370 I 0.862
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.859
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.856
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.855
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.854
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.854
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.850
Pm013209 Prunus mume Pm013209 I 0.846
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.846
Bra021536 Brassica rapa Bra021536 I 0.844
Bra037960 Brassica rapa Bra037960 I 0.844
Bo6g033010 Brassica oleracea Bo6g033010 I 0.844
Bo3g184450 Brassica oleracea Bo3g184450 I 0.844
ASIL1 Arabidopsis thaliana AT1G54060 D 0.843
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.842
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.842
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.842
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.842
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.842
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.840
Cla015773 Citrullus lanatus Cla015773 I 0.840
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.840
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.839
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.839
PK22475.1 Cannabis sativa PK22475.1 N 0.836
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.831
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.829
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.829
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.829
ASIL2 Arabidopsis thaliana AT3G14180 D 0.829
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.829
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.829
MDP0000281471 Malus domestica MDP0000281471 I 0.828
MDP0000255104 Malus domestica MDP0000255104 I 0.828
Bra021534 Brassica rapa Bra021534 I 0.828
29727.m000472 Ricinus communis 29727.m000472 I 0.825
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.825
TCM_029209 Theobroma cacao TCM_029209 I 0.825
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.825
Bo1g134590 Brassica oleracea Bo1g134590 I 0.816
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.814
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.814
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.813
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.813
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.813