POPTR_0003s19840 (Populus trichocarpa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 POPTR_0003s19840 T249668_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.941 0.887
ASIL1
M02264_2.00 		Arabidopsis thaliana
NNDHCGDHNN
NNDHCGDHNN		 PBM
Weirauch et al.(2014)
pTH7464 		0.821 0.606
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s19840.1 MADF 88 165

Links

Other MADF family TFs
Other Populus trichocarpa TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.962
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.960
Pm013209 Prunus mume Pm013209 I 0.958
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.958
MDP0000255104 Malus domestica MDP0000255104 I 0.958
MDP0000281471 Malus domestica MDP0000281471 I 0.958
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.956
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.952
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.945
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.945
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.945
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.945
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.941
ASIL2 Arabidopsis thaliana AT3G14180 D 0.941
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.941
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.941
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.941
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.941
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.941
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.939
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.934
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.929
Cla015773 Citrullus lanatus Cla015773 I 0.929
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.920
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.909
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.908
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.908
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.907
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.907
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.906
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.906
29727.m000472 Ricinus communis 29727.m000472 I 0.906
TCM_029209 Theobroma cacao TCM_029209 I 0.906
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.905
Lus10020652.g Linum usitatissimum Lus10020652.g I 0.901
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.898
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.898
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.898
PK22475.1 Cannabis sativa PK22475.1 N 0.896
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.893
29814.m000741 Ricinus communis 29814.m000741 I 0.893
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.892
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.891
Bo3g065930 Brassica oleracea Bo3g065930 I 0.890
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.889
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.887
MDP0000097759 Malus domestica MDP0000097759 N 0.885
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.885
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.884
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.878
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.874
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.874
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.873
MDP0000943251 Malus domestica MDP0000943251 N 0.872
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.869
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.867
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.860
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.860
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.856
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.855
Bo1g134590 Brassica oleracea Bo1g134590 I 0.854
TCM_042467 Theobroma cacao TCM_042467 N 0.851
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.849
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.847
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.846
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.846
Bra014370 Brassica rapa Bra014370 I 0.841
mgf006505m Mimulus guttatus mgf006505m I 0.838
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.837
AMTR_s00007p00263040 Amborella trichopoda AMTR_s00007p00263040 N 0.832
Bra037960 Brassica rapa Bra037960 I 0.831
Bo6g050870 Brassica oleracea Bo6g050870 I 0.825
ASIL1 Arabidopsis thaliana AT1G54060 D 0.821