Carubv10015321m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10015321m.g T250627_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.971 0.986
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015321m MADF 99 176

Links

Other MADF family TFs
Other Capsella rubella TFs

60 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.971
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.971
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.971
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.971
ASIL2 Arabidopsis thaliana AT3G14180 D 0.971
Bo3g065930 Brassica oleracea Bo3g065930 I 0.943
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.941
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.925
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.923
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.921
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.918
Pm013209 Prunus mume Pm013209 I 0.918
MDP0000255104 Malus domestica MDP0000255104 I 0.917
MDP0000281471 Malus domestica MDP0000281471 I 0.917
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.913
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.909
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.893
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.893
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.892
Cla015773 Citrullus lanatus Cla015773 I 0.892
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.892
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.892
Bo1g134590 Brassica oleracea Bo1g134590 I 0.884
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.882
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.879
Bra021534 Brassica rapa Bra021534 I 0.878
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.874
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.861
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.861
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.860
SELMODRAFT_68039 Selaginella moellendorffii SELMODRAFT_68039 I 0.857
SELMODRAFT_68041 Selaginella moellendorffii SELMODRAFT_68041 I 0.857
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.853
Lus10020652.g Linum usitatissimum Lus10020652.g I 0.852
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.851
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.845
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.842
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.841
29814.m000741 Ricinus communis 29814.m000741 I 0.841
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.840
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.838
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.832
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.832
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.829
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.829
AMTR_s00021p00065350 Amborella trichopoda AMTR_s00021p00065350 I 0.828
Bra021536 Brassica rapa Bra021536 I 0.828
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.826
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.826
TCM_029209 Theobroma cacao TCM_029209 I 0.823
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.823
29727.m000472 Ricinus communis 29727.m000472 I 0.823
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.823
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.823
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.821
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.817
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.815
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.815
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.815
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.814