POPTR_0008s07140 (Populus trichocarpa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 POPTR_0008s07140 T249675_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.821 0.627
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s07140.1 MADF 32 105

Links

Other MADF family TFs
Other Populus trichocarpa TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.967
29814.m000741 Ricinus communis 29814.m000741 I 0.967
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.959
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.959
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.951
MDP0000097759 Malus domestica MDP0000097759 N 0.936
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.933
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.933
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.929
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.928
MDP0000943251 Malus domestica MDP0000943251 N 0.927
TCM_042467 Theobroma cacao TCM_042467 N 0.921
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.913
MDP0000281471 Malus domestica MDP0000281471 I 0.901
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.896
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.896
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.896
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.896
Bo5g136850 Brassica oleracea Bo5g136850 I 0.896
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.893
mgf006505m Mimulus guttatus mgf006505m I 0.892
Pm013209 Prunus mume Pm013209 I 0.890
MDP0000255104 Malus domestica MDP0000255104 I 0.890
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.890
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.890
Bra034165 Brassica rapa Bra034165 I 0.889
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.887
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.886
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.881
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.878
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.876
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.876
mgf001239m Mimulus guttatus mgf001239m N 0.874
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.871
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.869
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.867
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.863
Bra034866 Brassica rapa Bra034866 I 0.863
mgf000047m Mimulus guttatus mgf000047m I 0.862
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.861
Bo9g177060 Brassica oleracea Bo9g177060 I 0.856
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.853
PK20477.1 Cannabis sativa PK20477.1 N 0.851
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.849
Ca_02494 Cicer arietinum Ca_02494 N 0.847
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.842
29900.m001628 Ricinus communis 29900.m001628 I 0.842
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.842
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.842
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.838
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.838
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.838
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.837
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.836
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.836
Cla015773 Citrullus lanatus Cla015773 I 0.836
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.836
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.836
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.836
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.836
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.836
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.835
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.833
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.832
Bra009119 Brassica rapa Bra009119 I 0.832
Ca_19877 Cicer arietinum Ca_19877 I 0.830
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.830
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.828
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.825
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.823
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.823
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.822
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.821
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.821
ASIL2 Arabidopsis thaliana AT3G14180 D 0.821
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.821
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.821
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.821
Aquca_039_00151 Aquilegia coerulea Aquca_039_00151 N 0.820
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.819
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.817
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.817
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.816
Ca_00394 Cicer arietinum Ca_00394 I 0.816
Bostr.13129s0416 Boechera stricta Bostr.13129s0416 I 0.816
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.816
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.816
TCM_029695 Theobroma cacao TCM_029695 I 0.816
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.816
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.816
Si010246m.g Setaria italica Si010246m.g N 0.815
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.815
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.815
GRMZM2G392168 Zea mays GRMZM2G392168 N 0.815