CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
AT3G11100
(
Arabidopsis thaliana
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF10545 (MADF_DNA_bdg)
IPR006578
AT3G11100
T247882_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Is regulated by RTE1. Mutations in ETR1 block ethylene stimulation of flavonol synthesis.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT5G05550
M06978_2.00
Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND
Dap-seq
OMalley et al.(2016)
AT5G05550_col_a
0.874
0.701
AT5G05550
M06979_2.00
Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD
Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a
0.874
0.701
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G11100.1
MADF
32
104
EAWGDRYVNLNRGNLRQNDWKEVADAVNSSHGNGRPKTDVQCKNRIDTLKKKYKTEKAKPLSNWCFFDRLDFL
Links
Other
MADF
family TFs
Other
Arabidopsis thaliana
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
scaffold_301280.1
Arabidopsis lyrata
scaffold_301280.1
I
0.971
Bostr.19424s1046
Boechera stricta
Bostr.19424s1046
I
0.971
Thhalv10021383m.g
Eutrema salsugineum
Thhalv10021383m.g
I
0.971
Bo5g136850
Brassica oleracea
Bo5g136850
I
0.971
Bra034165
Brassica rapa
Bra034165
I
0.943
Bo9g177060
Brassica oleracea
Bo9g177060
I
0.936
Bra009119
Brassica rapa
Bra009119
I
0.924
Carubv10014421m.g
Capsella rubella
Carubv10014421m.g
I
0.923
Bra034866
Brassica rapa
Bra034866
I
0.922
MDP0000097759
Malus domestica
MDP0000097759
N
0.905
evm.TU.supercontig_19.152
Carica papaya
evm.TU.supercontig_19.152
I
0.905
29814.m000741
Ricinus communis
29814.m000741
I
0.897
GSMUA_Achr9G04510_001
Musa acuminata
GSMUA_Achr9G04510_001
I
0.896
POPTR_0008s07140
Populus trichocarpa
POPTR_0008s07140
I
0.896
SapurV1A.0650s0110
Salix purpurea
SapurV1A.0650s0110
I
0.896
Carubv10001830m.g
Capsella rubella
Carubv10001830m.g
I
0.893
PRUPE_ppa010427mg
Prunus persica
PRUPE_ppa010427mg
I
0.891
MDP0000943251
Malus domestica
MDP0000943251
N
0.884
Bostr.13129s0416
Boechera stricta
Bostr.13129s0416
I
0.884
Ciclev10033792m.g
Citrus clementina
Ciclev10033792m.g
I
0.881
orange1.1g024563m.g
Citrus sinensis
orange1.1g024563m.g
I
0.881
Solyc06g051120.2
Solanum lycopersicum
Solyc06g051120.2
I
0.880
PGSC0003DMG400030023
Solanum tuberosum
PGSC0003DMG400030023
I
0.880
Si010246m.g
Setaria italica
Si010246m.g
N
0.878
AT5G05550
Arabidopsis thaliana
AT5G05550
D
0.874
VIT_08s0058g00200
Vitis vinifera
VIT_08s0058g00200
I
0.871
GSMUA_Achr8G23650_001
Musa acuminata
GSMUA_Achr8G23650_001
I
0.870
Cagra.1504s0056
Capsella grandiflora
Cagra.1504s0056
I
0.869
VIT_13s0067g01440
Vitis vinifera
VIT_13s0067g01440
N
0.868
GSMUA_Achr3G05880_001
Musa acuminata
GSMUA_Achr3G05880_001
I
0.859
Sb06g017920
Sorghum bicolor
Sb06g017920
N
0.857
GRMZM2G392168
Zea mays
GRMZM2G392168
N
0.852
gene21007-v1.0-hybrid
Fragaria vesca
gene21007-v1.0-hybrid
N
0.844
TCM_042467
Theobroma cacao
TCM_042467
N
0.835
Traes_6AL_7A4395C60
Triticum aestivum
Traes_6AL_7A4395C60
N
0.833
mgf006505m
Mimulus guttatus
mgf006505m
I
0.823
mgf000047m
Mimulus guttatus
mgf000047m
I
0.818
Traes_6DL_C27CEED76
Triticum aestivum
Traes_6DL_C27CEED76
N
0.817
Lus10020652.g
Linum usitatissimum
Lus10020652.g
I
0.816
gene05400-v1.0-hybrid
Fragaria vesca
gene05400-v1.0-hybrid
I
0.812