orange1.1g024563m.g (Citrus sinensis)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 orange1.1g024563m.g T250802_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.861 0.657
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g024563m MADF 36 109
orange1.1g025085m MADF 36 109
orange1.1g025430m MADF 36 109
orange1.1g025448m MADF 36 109
orange1.1g025651m MADF 36 109

Links

Other MADF family TFs
Other Citrus sinensis TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.971
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.964
29814.m000741 Ricinus communis 29814.m000741 I 0.964
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.959
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.944
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.940
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.940
MDP0000097759 Malus domestica MDP0000097759 N 0.930
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.928
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.922
MDP0000943251 Malus domestica MDP0000943251 N 0.921
TCM_042467 Theobroma cacao TCM_042467 N 0.916
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.910
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.908
MDP0000281471 Malus domestica MDP0000281471 I 0.908
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.904
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.902
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.897
Pm013209 Prunus mume Pm013209 I 0.897
MDP0000255104 Malus domestica MDP0000255104 I 0.897
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.897
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.894
mgf006505m Mimulus guttatus mgf006505m I 0.889
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.888
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.884
Bo5g136850 Brassica oleracea Bo5g136850 I 0.881
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.881
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.881
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.881
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.881
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.881
Bra034165 Brassica rapa Bra034165 I 0.873
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.864
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.862
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.861
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.861
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.861
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.861
ASIL2 Arabidopsis thaliana AT3G14180 D 0.861
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.861
PK20477.1 Cannabis sativa PK20477.1 N 0.857
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.857
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.857
mgf001239m Mimulus guttatus mgf001239m N 0.854
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.849
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.849
Cla015773 Citrullus lanatus Cla015773 I 0.849
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.849
mgf000047m Mimulus guttatus mgf000047m I 0.849
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.849
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.847
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.847
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.846
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.846
Bra034866 Brassica rapa Bra034866 I 0.845
Ca_02494 Cicer arietinum Ca_02494 N 0.841
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.841
Bo9g177060 Brassica oleracea Bo9g177060 I 0.837
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.836
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.835
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.833
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.830
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.830
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.828
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.826
GRMZM2G392168 Zea mays GRMZM2G392168 N 0.824
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.822
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.821
Lus10020652.g Linum usitatissimum Lus10020652.g I 0.821
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.821
29900.m001628 Ricinus communis 29900.m001628 I 0.821
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.821
Traes_6AL_7A4395C60 Triticum aestivum Traes_6AL_7A4395C60 N 0.820
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.815
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.814