ASIL1 (Arabidopsis lyrata)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 fgenesh2_kg.1__4489__AT1G54060.1 T249060_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL1
M02264_2.00 		Arabidopsis thaliana
NNDHCGDHNN
NNDHCGDHNN		 PBM
Weirauch et al.(2014)
pTH7464 		0.962 0.871
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.832 0.643
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__4489__AT1G54060.1 MADF 103 178

Links

Other MADF family TFs
Other Arabidopsis lyrata TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.971
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.968
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.968
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.964
Bra014370 Brassica rapa Bra014370 I 0.962
ASIL1 Arabidopsis thaliana AT1G54060 D 0.962
Bo6g050870 Brassica oleracea Bo6g050870 I 0.954
Bo3g184450 Brassica oleracea Bo3g184450 I 0.951
Bo6g033010 Brassica oleracea Bo6g033010 I 0.951
Bra037960 Brassica rapa Bra037960 I 0.951
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.901
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.894
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.891
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.878
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.860
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.858
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.858
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.858
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.854
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.849
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.844
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.844
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.844
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.844
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.844
TCM_029209 Theobroma cacao TCM_029209 I 0.844
29727.m000472 Ricinus communis 29727.m000472 I 0.844
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.844
Cla015773 Citrullus lanatus Cla015773 I 0.843
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.843
MDP0000255104 Malus domestica MDP0000255104 I 0.835
MDP0000281471 Malus domestica MDP0000281471 I 0.835
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.835
ASIL2 Arabidopsis thaliana AT3G14180 D 0.832
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.832
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.832
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.832
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.832
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.832
PK22475.1 Cannabis sativa PK22475.1 N 0.830
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.829
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.825
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.820
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.820
Pm013209 Prunus mume Pm013209 I 0.820
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.820
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.820
Bo3g065930 Brassica oleracea Bo3g065930 I 0.818
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.818
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.817
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.817
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.814