Cagra.3631s0002 (Capsella grandiflora)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cagra.3631s0002 T250612_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL1
M02264_2.00 		Arabidopsis thaliana
NNDHCGDHNN
NNDHCGDHNN		 PBM
Weirauch et al.(2014)
pTH7464 		0.863 0.589
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.845 0.644
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3631s0002.1.p MADF 63 141

Links

Other MADF family TFs
Other Capsella grandiflora TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.966
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.894
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.894
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.884
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.883
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.883
Bra014370 Brassica rapa Bra014370 I 0.879
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.872
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.869
Bo6g050870 Brassica oleracea Bo6g050870 I 0.867
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.867
ASIL1 Arabidopsis thaliana AT1G54060 D 0.863
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.861
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.861
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.856
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.856
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.856
Cla015773 Citrullus lanatus Cla015773 I 0.855
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.855
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.854
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.854
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.854
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.852
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.850
Bra037960 Brassica rapa Bra037960 I 0.849
Bo3g184450 Brassica oleracea Bo3g184450 I 0.849
Bo6g033010 Brassica oleracea Bo6g033010 I 0.849
Pm013209 Prunus mume Pm013209 I 0.846
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.846
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.845
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.845
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.845
ASIL2 Arabidopsis thaliana AT3G14180 D 0.845
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.845
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.845
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.845
MDP0000255104 Malus domestica MDP0000255104 I 0.844
MDP0000281471 Malus domestica MDP0000281471 I 0.844
Bra021536 Brassica rapa Bra021536 I 0.844
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.842
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.841
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.841
TCM_029209 Theobroma cacao TCM_029209 I 0.841
29727.m000472 Ricinus communis 29727.m000472 I 0.841
PK22475.1 Cannabis sativa PK22475.1 N 0.836
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.830
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.830
Bra021534 Brassica rapa Bra021534 I 0.828
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.827
Bo1g134590 Brassica oleracea Bo1g134590 I 0.816
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.816
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.813
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.813
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.813
Bo3g065930 Brassica oleracea Bo3g065930 I 0.812