Bo6g050870 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo6g050870 T247991_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL1
M02264_2.00 		Arabidopsis thaliana
NNDHCGDHNN
NNDHCGDHNN		 PBM
Weirauch et al.(2014)
pTH7464 		0.939 0.800
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g050870.1 MADF 88 163

Links

Other MADF family TFs
Other Brassica oleracea TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra014370 Brassica rapa Bra014370 I 0.965
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.964
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.959
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.959
Bo6g033010 Brassica oleracea Bo6g033010 I 0.955
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.954
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.954
Bra037960 Brassica rapa Bra037960 I 0.949
Bo3g184450 Brassica oleracea Bo3g184450 I 0.949
ASIL1 Arabidopsis thaliana AT1G54060 D 0.939
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.875
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.875
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.867
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.863
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.842
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.830
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.827
29727.m000472 Ricinus communis 29727.m000472 I 0.827
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.827
TCM_029209 Theobroma cacao TCM_029209 I 0.827
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.825
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.824
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.824
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.823
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.819
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.818
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.818
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.818
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.818
Pm013209 Prunus mume Pm013209 I 0.812
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.812