Carubv10025047m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10025047m.g T250634_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10025047m MADF 84 163

Links

Other MADF family TFs
Other Capsella rubella TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0239s0022 Capsella grandiflora Cagra.0239s0022 N 0.971
Bra000360 Brassica rapa Bra000360 N 0.958
Bo3g037360 Brassica oleracea Bo3g037360 N 0.958
Bostr.25993s0300 Boechera stricta Bostr.25993s0300 N 0.952
AT2G44730 Arabidopsis thaliana AT2G44730 N 0.952
Bo4g023990 Brassica oleracea Bo4g023990 N 0.950
fgenesh2_kg.4__2662__AT2G44730.1 Arabidopsis lyrata fgenesh2_kg.4__2662__AT2G44730.1 N 0.945
POPTR_0002s14030 Populus trichocarpa POPTR_0002s14030 N 0.941
29709.m001180 Ricinus communis 29709.m001180 N 0.939
PK17306.1 Cannabis sativa PK17306.1 N 0.929
Bra004859 Brassica rapa Bra004859 N 0.922
SapurV1A.0033s0070 Salix purpurea SapurV1A.0033s0070 N 0.918
Thhalv10001488m.g Eutrema salsugineum Thhalv10001488m.g N 0.915
cassava12982.valid.m1 Manihot esculenta cassava12982.valid.m1 N 0.912
POPTR_0014s05010 Populus trichocarpa POPTR_0014s05010 N 0.909
Cla021714 Citrullus lanatus Cla021714 N 0.907
Cucsa.256710 Cucumis sativus Cucsa.256710 N 0.907
GLYMA18G48343 Glycine max GLYMA18G48343 N 0.900
orange1.1g018620m.g Citrus sinensis orange1.1g018620m.g N 0.891
Ciclev10020863m.g Citrus clementina Ciclev10020863m.g N 0.891
VIT_15s0021g01220 Vitis vinifera VIT_15s0021g01220 N 0.887
gene05318-v1.0-hybrid Fragaria vesca gene05318-v1.0-hybrid N 0.883
Gorai.004G167100 Gossypium raimondii Gorai.004G167100 N 0.883
TCM_005773 Theobroma cacao TCM_005773 N 0.883
Aquca_010_00154 Aquilegia coerulea Aquca_010_00154 N 0.881
Ca_06067 Cicer arietinum Ca_06067 N 0.874
mgf005560m Mimulus guttatus mgf005560m N 0.871
MTR_4g117990 Medicago truncatula MTR_4g117990 N 0.859
evm.TU.supercontig_41.83 Carica papaya evm.TU.supercontig_41.83 N 0.859
Ca_06795 Cicer arietinum Ca_06795 N 0.854
GLYMA08G05630 Glycine max GLYMA08G05630 N 0.854
MDP0000557282 Malus domestica MDP0000557282 N 0.849
GLYMA09G38050 Glycine max GLYMA09G38050 N 0.843
GRMZM2G379179 Zea mays GRMZM2G379179 N 0.832
GRMZM5G850092 Zea mays GRMZM5G850092 N 0.832
Cucsa.078220 Cucumis sativus Cucsa.078220 N 0.827
chr4.CM0739.40.nd Lotus japonicus chr4.CM0739.40.nd N 0.823
PRUPE_ppa010055mg Prunus persica PRUPE_ppa010055mg N 0.819