Traes_1AS_24511D656 (Triticum aestivum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Traes_1AS_24511D656 T256509_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.708 0.708
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.708 0.708
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.708 0.708
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.708 0.708
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.708 0.708
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.708 0.708
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_1AS_24511D656.1 MADS box 10 57

Links

Other MADS box family TFs
Other Triticum aestivum TFs

223 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_1AS_3232D5589 Triticum aestivum Traes_1AS_3232D5589 I 0.979
F775_08934 Aegilops tauschii F775_08934 I 0.958
Traes_1BS_7366111C0 Triticum aestivum Traes_1BS_7366111C0 I 0.958
Traes_1BS_7366111C01 Triticum aestivum Traes_1BS_7366111C01 I 0.958
Traes_1DS_F70AAB507 Triticum aestivum Traes_1DS_F70AAB507 I 0.958
F775_18161 Aegilops tauschii F775_18161 I 0.958
Traes_1DS_A0312C264 Triticum aestivum Traes_1DS_A0312C264 I 0.958
F775_20565 Aegilops tauschii F775_20565 I 0.854
OGLUM06G15040 Oryza glumaepatula OGLUM06G15040 I 0.833
OBART06G14060 Oryza barthii OBART06G14060 I 0.833
OMERI06G15180 Oryza meridionalis OMERI06G15180 I 0.833
ORUFI06G14980 Oryza rufipogon ORUFI06G14980 I 0.833
Traes_4AL_72A03AD23 Triticum aestivum Traes_4AL_72A03AD23 I 0.833
OS06G0347700 Oryza sativa OS06G0347700 I 0.833
ORGLA06G0125600 Oryza glaberrima ORGLA06G0125600 I 0.833
OPUNC06G13170 Oryza punctata OPUNC06G13170 I 0.833
ONIVA06G16870 Oryza nivara ONIVA06G16870 I 0.833
OLONG_018231 Oryza longistaminata OLONG_018231 I 0.833
BGIOSGA022872 Oryza indica BGIOSGA022872 I 0.833
OB06G22200 Oryza brachyantha OB06G22200 I 0.812
Traes_7BL_F5B6736D0 Triticum aestivum Traes_7BL_F5B6736D0 I 0.812
Bra029155 Brassica rapa Bra029155 I 0.812
Bostr.15774s0334 Boechera stricta Bostr.15774s0334 I 0.792
Bo00946s010 Brassica oleracea Bo00946s010 I 0.792
Bra028282 Brassica rapa Bra028282 I 0.792
Bo9g103660 Brassica oleracea Bo9g103660 I 0.792
Thhalv10015303m.g Eutrema salsugineum Thhalv10015303m.g I 0.771
OPUNC08G13690 Oryza punctata OPUNC08G13690 I 0.771
AGL71 Arabidopsis lyrata Al_scaffold_0008_1558 I 0.771
AGL71 Arabidopsis thaliana AT5G51870 I 0.771
Cagra.0277s0030 Capsella grandiflora Cagra.0277s0030 I 0.771
AGL72 Arabidopsis thaliana AT5G51860 I 0.771
scaffold_801621.1 Arabidopsis lyrata scaffold_801621.1 I 0.771
Thhalv10014716m.g Eutrema salsugineum Thhalv10014716m.g I 0.771
Bra028283 Brassica rapa Bra028283 I 0.771
Carubv10027093m.g Capsella rubella Carubv10027093m.g I 0.771
Carubv10026982m.g Capsella rubella Carubv10026982m.g I 0.750
Bostr.15774s0333 Boechera stricta Bostr.15774s0333 I 0.750
OLONG_011763 Oryza longistaminata OLONG_011763 I 0.750
GLYMA10G38541 Glycine max GLYMA10G38541 I 0.750
ONIVA08G16700 Oryza nivara ONIVA08G16700 I 0.750
Bra013891 Brassica rapa Bra013891 I 0.750
BGIOSGA026939 Oryza indica BGIOSGA026939 I 0.750
Bo1g040180 Brassica oleracea Bo1g040180 I 0.750
OGLUM08G16360 Oryza glumaepatula OGLUM08G16360 I 0.750
gene05027-v1.0-hybrid Fragaria vesca gene05027-v1.0-hybrid I 0.745
MADS23 Oryza sativa OS08G0431900 I 0.729
OGLUM08G22840 Oryza glumaepatula OGLUM08G22840 I 0.729
Cagra.0542s0040 Capsella grandiflora Cagra.0542s0040 I 0.729
ORUFI08G24040 Oryza rufipogon ORUFI08G24040 I 0.729
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.729
OBART08G21560 Oryza barthii OBART08G21560 I 0.729
Cagra.2248s0020 Capsella grandiflora Cagra.2248s0020 I 0.729
Bo7g110310 Brassica oleracea Bo7g110310 I 0.729
ORGLA08G0137000 Oryza glaberrima ORGLA08G0137000 I 0.729
ONIVA08G24570 Oryza nivara ONIVA08G24570 I 0.729
ORGLA08G0229900 Oryza glaberrima ORGLA08G0229900 I 0.729
OMERI06G13650 Oryza meridionalis OMERI06G13650 I 0.729
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.729
OMERI08G12880 Oryza meridionalis OMERI08G12880 I 0.729
BGIOSGA029053 Oryza indica BGIOSGA029053 I 0.729
Eucgr.K00208 Eucalyptus grandis Eucgr.K00208 I 0.729
MLOC_12290 Hordeum vulgare MLOC_12290 I 0.729
mgf018870m Mimulus guttatus mgf018870m I 0.729
TRIUR3_19056 Triticum urartu TRIUR3_19056 I 0.729
Traes_6DS_2BAD7A60A Triticum aestivum Traes_6DS_2BAD7A60A I 0.729
Traes_6AS_D6ABA1D79 Triticum aestivum Traes_6AS_D6ABA1D79 I 0.729
Bo3g023570 Brassica oleracea Bo3g023570 I 0.729
BRADI3G00730 Brachypodium distachyon BRADI3G00730 I 0.729
Pavir.Da00991 Panicum virgatum Pavir.Da00991 I 0.729
Carubv10027529m.g Capsella rubella Carubv10027529m.g I 0.729
cassava26340.m1 Manihot esculenta cassava26340.m1 I 0.729
Bra029154 Brassica rapa Bra029154 I 0.729
e_gw1.55.13.1 Physcomitrella patens e_gw1.55.13.1 I 0.729
fgenesh1_pg.scaffold_118000119 Physcomitrella patens fgenesh1_pg.scaffold_118000119 I 0.729
OBART08G15610 Oryza barthii OBART08G15610 I 0.729
F775_43625 Aegilops tauschii F775_43625 I 0.729
Lus10027404.g Linum usitatissimum Lus10027404.g I 0.729
OB08G23110 Oryza brachyantha OB08G23110 I 0.729
Thhalv10026205m.g Eutrema salsugineum Thhalv10026205m.g I 0.729
OS08G0531900 Oryza sativa OS08G0531900 I 0.729
GLYMA05G29595 Glycine max GLYMA05G29595 I 0.729
Lus10031665.g Linum usitatissimum Lus10031665.g I 0.729
GLYMA20G29300 Glycine max GLYMA20G29300 I 0.729
GLYMA08G12730 Glycine max GLYMA08G12730 I 0.729
PGSC0003DMG400023729 Solanum tuberosum PGSC0003DMG400023729 I 0.729
LPERR08G12860 Leersia perrieri LPERR08G12860 I 0.729
TRIUR3_21732 Triticum urartu TRIUR3_21732 I 0.721
gene02453-v1.0-hybrid Fragaria vesca gene02453-v1.0-hybrid N 0.714
Carubv10006544m.g Capsella rubella Carubv10006544m.g I 0.708
Carubv10015972m.g Capsella rubella Carubv10015972m.g I 0.708
Carubv10027142m.g Capsella rubella Carubv10027142m.g I 0.708
Thhalv10022995m.g Eutrema salsugineum Thhalv10022995m.g I 0.708
Aquca_013_00471 Aquilegia coerulea Aquca_013_00471 I 0.708
Aquca_032_00047 Aquilegia coerulea Aquca_032_00047 I 0.708
mgf005831m Mimulus guttatus mgf005831m I 0.708
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.708
Cucsa.194800 Cucumis sativus Cucsa.194800 I 0.708
Bostr.13083s0004 Boechera stricta Bostr.13083s0004 I 0.708
chr4.CM0046.610.nc Lotus japonicus chr4.CM0046.610.nc I 0.708
Cagra.3821s0004 Capsella grandiflora Cagra.3821s0004 I 0.708
Ciclev10006654m.g Citrus clementina Ciclev10006654m.g I 0.708
chr2.CM0099.100.nc Lotus japonicus chr2.CM0099.100.nc I 0.708
Bostr.7867s0353 Boechera stricta Bostr.7867s0353 I 0.708
Cagra.4003s0006 Capsella grandiflora Cagra.4003s0006 I 0.708
evm.TU.supercontig_4.204 Carica papaya evm.TU.supercontig_4.204 I 0.708
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.708
MDP0000242009 Malus domestica MDP0000242009 I 0.708
MDP0000250080 Malus domestica MDP0000250080 I 0.708
MDP0000228942 Malus domestica MDP0000228942 I 0.708
MDP0000156783 Malus domestica MDP0000156783 I 0.708
MDP0000135652 Malus domestica MDP0000135652 I 0.708
MDP0000136650 Malus domestica MDP0000136650 I 0.708
MDP0000144516 Malus domestica MDP0000144516 I 0.708
SapurV1A.0029s0080 Salix purpurea SapurV1A.0029s0080 I 0.708
MDP0000254052 Malus domestica MDP0000254052 I 0.708
Pavir.J33965 Panicum virgatum Pavir.J33965 I 0.708
Q8VWZ2_MALDO Malus domestica Q8VWZ2_MALDO D 0.708
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.708
Pavir.J26790 Panicum virgatum Pavir.J26790 I 0.708
Pavir.J00016 Panicum virgatum Pavir.J00016 I 0.708
MDP0000324166 Malus domestica MDP0000324166 I 0.708
orange1.1g033826m.g Citrus sinensis orange1.1g033826m.g I 0.708
Pavir.Fb01587 Panicum virgatum Pavir.Fb01587 I 0.708
Gorai.011G035500 Gossypium raimondii Gorai.011G035500 I 0.708
Gorai.007G009800 Gossypium raimondii Gorai.007G009800 I 0.708
Eucgr.K00192 Eucalyptus grandis Eucgr.K00192 I 0.708
Eucgr.K00194 Eucalyptus grandis Eucgr.K00194 I 0.708
Eucgr.K00200 Eucalyptus grandis Eucgr.K00200 I 0.708
Eucgr.K00190 Eucalyptus grandis Eucgr.K00190 I 0.708
Eucgr.I02600 Eucalyptus grandis Eucgr.I02600 I 0.708
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I 0.708
Eucgr.F02161 Eucalyptus grandis Eucgr.F02161 I 0.708
Eucgr.G03284 Eucalyptus grandis Eucgr.G03284 I 0.708
Eucgr.K00203 Eucalyptus grandis Eucgr.K00203 I 0.708
Eucgr.K00204 Eucalyptus grandis Eucgr.K00204 I 0.708
Thhalv10004954m.g Eutrema salsugineum Thhalv10004954m.g I 0.708
gene24852-v1.0-hybrid Fragaria vesca gene24852-v1.0-hybrid I 0.708
Gorai.003G090800 Gossypium raimondii Gorai.003G090800 I 0.708
gene13354-v1.0-hybrid Fragaria vesca gene13354-v1.0-hybrid I 0.708
gene12119-v1.0-hybrid Fragaria vesca gene12119-v1.0-hybrid I 0.708
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.708
Q9ATE7_PETHY Petunia x hybrida Q9ATE7_PETHY D 0.708
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I 0.708
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.708
LPERR02G00370 Leersia perrieri LPERR02G00370 I 0.708
LPERR12G05240 Leersia perrieri LPERR12G05240 I 0.708
MLOC_12133 Hordeum vulgare MLOC_12133 I 0.708
GRMZM2G152862 Zea mays GRMZM2G152862 I 0.708
GRMZM2G137510 Zea mays GRMZM2G137510 I 0.708
F775_15097 Aegilops tauschii F775_15097 I 0.708
F775_30822 Aegilops tauschii F775_30822 I 0.708
GLYMA02G33040 Glycine max GLYMA02G33040 I 0.708
MLOC_57890 Hordeum vulgare MLOC_57890 I 0.708
MTR_4g093030 Medicago truncatula MTR_4g093030 I 0.708
OMERI12G04040 Oryza meridionalis OMERI12G04040 I 0.708
ONIVA12G05640 Oryza nivara ONIVA12G05640 I 0.708
OPUNC04G05760 Oryza punctata OPUNC04G05760 I 0.708
OLONG_006914 Oryza longistaminata OLONG_006914 I 0.708
OGLUM12G07150 Oryza glumaepatula OGLUM12G07150 I 0.708
OB04G15510 Oryza brachyantha OB04G15510 I 0.708
OB12G15620 Oryza brachyantha OB12G15620 I 0.708
OBART12G05940 Oryza barthii OBART12G05940 I 0.708
F775_10590 Aegilops tauschii F775_10590 I 0.708
F775_05654 Aegilops tauschii F775_05654 I 0.708
Bo2g162920 Brassica oleracea Bo2g162920 I 0.708
Bo4g108190 Brassica oleracea Bo4g108190 I 0.708
Bo6g076090 Brassica oleracea Bo6g076090 I 0.708
BGIOSGA018621 Oryza indica BGIOSGA018621 I 0.708
AGL15 Arabidopsis thaliana AT5G13790 D 0.708
AMTR_s00109p00015260 Amborella trichopoda AMTR_s00109p00015260 I 0.708
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.708
ANR1 Arabidopsis thaliana AT2G14210 I 0.708
Bo8g050720 Brassica oleracea Bo8g050720 I 0.708
Bra003356 Brassica rapa Bra003356 I 0.708
BRADI2G59187 Brachypodium distachyon BRADI2G59187 I 0.708
BRADI3G32090 Brachypodium distachyon BRADI3G32090 I 0.708
BRADI4G40350 Brachypodium distachyon BRADI4G40350 I 0.708
Bra035907 Brassica rapa Bra035907 I 0.708
Bra029314 Brassica rapa Bra029314 I 0.708
Bra014552 Brassica rapa Bra014552 I 0.708
Bra029281 Brassica rapa Bra029281 I 0.708
OPUNC12G05660 Oryza punctata OPUNC12G05660 I 0.708
ORGLA12G0056500 Oryza glaberrima ORGLA12G0056500 I 0.708
Traes_2AL_8DF89AA72 Triticum aestivum Traes_2AL_8DF89AA72 I 0.708
Traes_2DL_6CD5A5CD9 Triticum aestivum Traes_2DL_6CD5A5CD9 I 0.708
TRAES3BF009000040CFD_g Triticum aestivum TRAES3BF009000040CFD_g I 0.708
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.708
Solyc10g080030.1 Solanum lycopersicum Solyc10g080030.1 I 0.708
Pm019404 Prunus mume Pm019404 I 0.708
Si023214m.g Setaria italica Si023214m.g I 0.708
Solyc02g071730.2 Solanum lycopersicum Solyc02g071730.2 I 0.708
Traes_5AS_7BFB385EF Triticum aestivum Traes_5AS_7BFB385EF I 0.708
Traes_5DS_16243E52C Triticum aestivum Traes_5DS_16243E52C I 0.708
Cla006326 Citrullus lanatus Cla006326 I 0.708
Cla006973 Citrullus lanatus Cla006973 I 0.708
Pm010346 Prunus mume Pm010346 I 0.708
ANR1 Vitis vinifera VIT_18s0001g07900 I 0.708
VIT_16s0022g02400 Vitis vinifera VIT_16s0022g02400 I 0.708
TRIUR3_18402 Triticum urartu TRIUR3_18402 I 0.708
TRIUR3_28215 Triticum urartu TRIUR3_28215 I 0.708
Si015525m.g Setaria italica Si015525m.g I 0.708
Si019985m.g Setaria italica Si019985m.g I 0.708
POPTR_0001s29100 Populus trichocarpa POPTR_0001s29100 I 0.708
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.708
POPTR_0004s06310 Populus trichocarpa POPTR_0004s06310 I 0.708
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.708
MADS13 Oryza sativa OS12G0207000 I 0.708
ORUFI05G07100 Oryza rufipogon ORUFI05G07100 I 0.708
ORUFI12G06810 Oryza rufipogon ORUFI12G06810 I 0.708
OS05G0203800 Oryza sativa OS05G0203800 I 0.708
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.708
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.708
Sb06g019040 Sorghum bicolor Sb06g019040 I 0.708
Sb07g021110 Sorghum bicolor Sb07g021110 I 0.708
Sb07g026180 Sorghum bicolor Sb07g026180 I 0.708
Q9AR49_MAIZE Zea mays Q9AR49_MAIZE D 0.708
PRUPE_ppa019267mg Prunus persica PRUPE_ppa019267mg I 0.708
PRUPE_ppa010595mg Prunus persica PRUPE_ppa010595mg I 0.708
AGL15 Populus trichocarpa POPTR_0009s06060 I 0.708
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.705
Traes_2DL_6A10DD109 Triticum aestivum Traes_2DL_6A10DD109 I 0.702
SVP Arabidopsis thaliana AT2G22540 D 0.702