cassava27416.m1 (Manihot esculenta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 cassava27416.m1 T257201_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava27416.m1 MADS box 21 68

Links

Other MADS box family TFs
Other Manihot esculenta TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27866.m000233 Ricinus communis 27866.m000233 N 0.917
POPTR_0017s06800 Populus trichocarpa POPTR_0017s06800 N 0.875
POPTR_0017s06710 Populus trichocarpa POPTR_0017s06710 N 0.875
POPTR_0017s06810 Populus trichocarpa POPTR_0017s06810 N 0.875
SapurV1A.0150s0040 Salix purpurea SapurV1A.0150s0040 N 0.833
PGSC0003DMG400039595 Solanum tuberosum PGSC0003DMG400039595 N 0.729
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.708
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.708
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.708
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.708
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.708
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.708
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.708
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.708
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.708
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.708
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.708
30099.m001672 Ricinus communis 30099.m001672 N 0.708
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.708
POPTR_0004s00400 Populus trichocarpa POPTR_0004s00400 N 0.708
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.708
mgf024454m Mimulus guttatus mgf024454m N 0.708
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.708
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.708
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.708
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.708
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.708
GRMZM2G035092 Zea mays GRMZM2G035092 N 0.702