CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo9g028250
(
Brassica oleracea
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bo9g028250
T267610_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PHR1
M02302_2.00
Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7249
0.720
0.894
PHR1
M02329_2.00
Oryza sativa
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7755
0.671
0.851
PHL1
M02310_2.00
Arabidopsis thaliana
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7122
0.671
0.872
PHL1
M07132_2.00
Arabidopsis thaliana
MDRGAATATTCBNWN
NWNVGAATATTCYHK
Dap-seq
OMalley et al.(2016)
At5g29000_col_a
0.671
0.872
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo9g028250.1
Myb
162
213
RMRWTPELHEAFVEAVNHLGGMNNAKPKAVLKHMKVQGLTIYHVKSHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Brassica oleracea
TFs
107 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra036679
Brassica rapa
Bra036679
I
0.909
Bra036469
Brassica rapa
Bra036469
I
0.836
Bo7g003580
Brassica oleracea
Bo7g003580
I
0.800
GLYMA03G41040
Glycine max
GLYMA03G41040
I
0.772
chr1.CM0600.200.nd
Lotus japonicus
chr1.CM0600.200.nd
I
0.772
MDP0000132340
Malus domestica
MDP0000132340
I
0.738
MDP0000159434
Malus domestica
MDP0000159434
I
0.728
cassava37547.valid.m1
Manihot esculenta
cassava37547.valid.m1
I
0.720
mgf005047m
Mimulus guttatus
mgf005047m
I
0.720
Bostr.7867s0704
Boechera stricta
Bostr.7867s0704
I
0.720
Cagra.1225s0029
Capsella grandiflora
Cagra.1225s0029
I
0.720
29637.m000753
Ricinus communis
29637.m000753
I
0.720
Ca_12255
Cicer arietinum
Ca_12255
I
0.720
Solyc09g072830.2
Solanum lycopersicum
Solyc09g072830.2
I
0.720
TCM_003939
Theobroma cacao
TCM_003939
I
0.720
TCM_026171
Theobroma cacao
TCM_026171
I
0.720
Ciclev10019956m.g
Citrus clementina
Ciclev10019956m.g
I
0.720
chr1.CM0295.930.nd
Lotus japonicus
chr1.CM0295.930.nd
I
0.720
Thhalv10025330m.g
Eutrema salsugineum
Thhalv10025330m.g
I
0.720
MDP0000285150
Malus domestica
MDP0000285150
I
0.720
MDP0000321461
Malus domestica
MDP0000321461
I
0.720
orange1.1g011805m.g
Citrus sinensis
orange1.1g011805m.g
I
0.720
PK01035.1
Cannabis sativa
PK01035.1
I
0.720
Solyc06g008200.2
Solanum lycopersicum
Solyc06g008200.2
I
0.720
SapurV1A.0252s0390
Salix purpurea
SapurV1A.0252s0390
I
0.720
evm.TU.supercontig_87.3
Carica papaya
evm.TU.supercontig_87.3
I
0.720
Gorai.007G149100
Gossypium raimondii
Gorai.007G149100
I
0.720
Eucgr.A01323
Eucalyptus grandis
Eucgr.A01323
I
0.720
VIT_07s0005g04120
Vitis vinifera
VIT_07s0005g04120
I
0.720
MTR_7g098250
Medicago truncatula
MTR_7g098250
I
0.720
Bo8g054450
Brassica oleracea
Bo8g054450
I
0.720
GLYMA19G35080
Glycine max
GLYMA19G35080
I
0.720
GLYMA13G18805
Glycine max
GLYMA13G18805
I
0.720
GLYMA10G04540
Glycine max
GLYMA10G04540
I
0.720
Bra010355
Brassica rapa
Bra010355
I
0.720
PHR1
Arabidopsis thaliana
AT4G28610
D
0.720
PHR1
Arabidopsis lyrata
fgenesh2_kg.7__1335__AT4G28610.1
I
0.720
GLYMA03G32350
Glycine max
GLYMA03G32350
I
0.720
MTR_1g080330
Medicago truncatula
MTR_1g080330
I
0.712
Ca_03781
Cicer arietinum
Ca_03781
I
0.712
LjSGA_026114.1
Lotus japonicus
LjSGA_026114.1
I
0.712
GLYMA19G43690
Glycine max
GLYMA19G43690
I
0.712
Bo9g010090
Brassica oleracea
Bo9g010090
I
0.710
Bra036123
Brassica rapa
Bra036123
I
0.710
POPTR_0002s25960
Populus trichocarpa
POPTR_0002s25960
I
0.709
PRUPE_ppa004886mg
Prunus persica
PRUPE_ppa004886mg
I
0.709
Cagra.8766s0002
Capsella grandiflora
Cagra.8766s0002
I
0.707
Carubv10013614m.g
Capsella rubella
Carubv10013614m.g
I
0.707
Thhalv10002005m.g
Eutrema salsugineum
Thhalv10002005m.g
I
0.704
POPTR_0013s04530
Populus trichocarpa
POPTR_0013s04530
I
0.699
cassava31821.valid.m1
Manihot esculenta
cassava31821.valid.m1
I
0.698
Bo7g113230
Brassica oleracea
Bo7g113230
I
0.698
Bostr.7903s0128
Boechera stricta
Bostr.7903s0128
I
0.689
scaffold_304362.1
Arabidopsis lyrata
scaffold_304362.1
I
0.689
SapurV1A.0309s0130
Salix purpurea
SapurV1A.0309s0130
I
0.687
cassava44101.valid.m1
Manihot esculenta
cassava44101.valid.m1
I
0.681
Cucsa.027530
Cucumis sativus
Cucsa.027530
I
0.681
29680.m001711
Ricinus communis
29680.m001711
I
0.681
Cla003565
Citrullus lanatus
Cla003565
I
0.681
POPTR_0019s03750
Populus trichocarpa
POPTR_0019s03750
I
0.681
SapurV1A.0307s0080
Salix purpurea
SapurV1A.0307s0080
I
0.681
Lus10008197.g
Linum usitatissimum
Lus10008197.g
I
0.681
Lus10029607.g
Linum usitatissimum
Lus10029607.g
I
0.680
PK16227.1
Cannabis sativa
PK16227.1
I
0.678
PRUPE_ppa005708mg
Prunus persica
PRUPE_ppa005708mg
I
0.678
gene16679-v1.0-hybrid
Fragaria vesca
gene16679-v1.0-hybrid
I
0.678
Pm003600
Prunus mume
Pm003600
I
0.678
VIT_14s0036g01380
Vitis vinifera
VIT_14s0036g01380
I
0.676
Gorai.007G274700
Gossypium raimondii
Gorai.007G274700
I
0.674
MTR_7g093010
Medicago truncatula
MTR_7g093010
N
0.674
MTR_7g115530
Medicago truncatula
MTR_7g115530
I
0.672
PHR1
Oryza indica
BGIOSGA012553
I
0.671
PK01823.1
Cannabis sativa
PK01823.1
I
0.671
PHL1
Arabidopsis thaliana
AT5G29000
D
0.671
Pavir.J39104
Panicum virgatum
Pavir.J39104
I
0.671
Lus10022886.g
Linum usitatissimum
Lus10022886.g
I
0.671
Pavir.Ia03429
Panicum virgatum
Pavir.Ia03429
I
0.671
Lus10022885.g
Linum usitatissimum
Lus10022885.g
I
0.671
Lus10024938.g
Linum usitatissimum
Lus10024938.g
I
0.671
PHL1
Arabidopsis lyrata
fgenesh2_kg.6__2806__AT5G29000.2
I
0.671
GRMZM2G006477
Zea mays
GRMZM2G006477
I
0.671
AMTR_s00142p00049490
Amborella trichopoda
AMTR_s00142p00049490
I
0.671
LPERR03G14050
Leersia perrieri
LPERR03G14050
I
0.671
OPUNC03G15590
Oryza punctata
OPUNC03G15590
I
0.671
ORGLA03G0154000
Oryza glaberrima
ORGLA03G0154000
I
0.671
Si035682m.g
Setaria italica
Si035682m.g
I
0.671
PHR1
Oryza sativa
OS03G0329900
D
0.671
ONIVA03G17050
Oryza nivara
ONIVA03G17050
I
0.671
GSMUA_Achr8G12580_001
Musa acuminata
GSMUA_Achr8G12580_001
I
0.671
Bostr.23151s0001
Boechera stricta
Bostr.23151s0001
I
0.671
OB03G25800
Oryza brachyantha
OB03G25800
I
0.671
Aquca_017_00793
Aquilegia coerulea
Aquca_017_00793
I
0.671
OLONG_005622
Oryza longistaminata
OLONG_005622
I
0.671
GSMUA_Achr5G12960_001
Musa acuminata
GSMUA_Achr5G12960_001
I
0.671
OMERI03G14370
Oryza meridionalis
OMERI03G14370
I
0.671
Sb01g036440
Sorghum bicolor
Sb01g036440
I
0.671
orange1.1g014308m.g
Citrus sinensis
orange1.1g014308m.g
I
0.669
Ciclev10004984m.g
Citrus clementina
Ciclev10004984m.g
I
0.669
Eucgr.B02155
Eucalyptus grandis
Eucgr.B02155
I
0.669
Cucsa.037070
Cucumis sativus
Cucsa.037070
I
0.662
Cla006047
Citrullus lanatus
Cla006047
I
0.662
OB02G43730
Oryza brachyantha
OB02G43730
I
0.661
OLONG_010553
Oryza longistaminata
OLONG_010553
I
0.661
BGIOSGA005373
Oryza indica
BGIOSGA005373
I
0.661
ORUFI02G38560
Oryza rufipogon
ORUFI02G38560
I
0.661
TRIUR3_02291
Triticum urartu
TRIUR3_02291
I
0.661
Traes_6BL_5D8EE6802
Triticum aestivum
Traes_6BL_5D8EE6802
I
0.661