POPTR_0004s11460 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0004s11460 T278265_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATMYB121
M07091_2.00 		Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN		 Dap-seq
OMalley et al.(2016)
MYB121_col_a 		0.829 0.849
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s11460.1 Myb 12 59
POPTR_0004s11460.1 Myb 65 110

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

175 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra025410 Brassica rapa Bra025410 I 0.849
Bo7g088650 Brassica oleracea Bo7g088650 I 0.846
POPTR_0004s11720 Populus trichocarpa POPTR_0004s11720 I 0.846
ATMYB121 Vitis vinifera VIT_14s0083g01060 I 0.838
Bo9g009020 Brassica oleracea Bo9g009020 I 0.837
Carubv10018530m.g Capsella rubella Carubv10018530m.g I 0.829
Cagra.1138s0003 Capsella grandiflora Cagra.1138s0003 I 0.829
Bostr.0556s0619 Boechera stricta Bostr.0556s0619 I 0.829
ATMYB121 Arabidopsis thaliana AT3G30210 D 0.829
POPTR_0017s13370 Populus trichocarpa POPTR_0017s13370 I 0.828
Eucgr.I02057 Eucalyptus grandis Eucgr.I02057 I 0.827
Solyc02g089190.1 Solanum lycopersicum Solyc02g089190.1 I 0.826
PGSC0003DMG400001376 Solanum tuberosum PGSC0003DMG400001376 I 0.826
cassava9891.m1 Manihot esculenta cassava9891.m1 I 0.825
ATMYB121 Arabidopsis lyrata fgenesh2_kg.5__710__AT3G30210.1 I 0.823
SapurV1A.0323s0160 Salix purpurea SapurV1A.0323s0160 I 0.820
Gorai.001G207500 Gossypium raimondii Gorai.001G207500 I 0.819
Pm015392 Prunus mume Pm015392 I 0.816
Bra036202 Brassica rapa Bra036202 I 0.813
PRUPE_ppa016385mg Prunus persica PRUPE_ppa016385mg I 0.812
TCM_018971 Theobroma cacao TCM_018971 I 0.808
MDP0000286143 Malus domestica MDP0000286143 I 0.804
Ciclev10013466m.g Citrus clementina Ciclev10013466m.g I 0.803
orange1.1g047854m.g Citrus sinensis orange1.1g047854m.g I 0.803
Bra020744 Brassica rapa Bra020744 I 0.798
Thhalv10005370m.g Eutrema salsugineum Thhalv10005370m.g I 0.794
mgf002201m Mimulus guttatus mgf002201m I 0.793
Cla016762 Citrullus lanatus Cla016762 I 0.785
Cucsa.238540 Cucumis sativus Cucsa.238540 I 0.785
Gorai.001G090100 Gossypium raimondii Gorai.001G090100 I 0.780
Lus10005079.g Linum usitatissimum Lus10005079.g I 0.776
Lus10034372.g Linum usitatissimum Lus10034372.g I 0.771
evm.TU.supercontig_14.220 Carica papaya evm.TU.supercontig_14.220 I 0.767
GLYMA18G50891 Glycine max GLYMA18G50891 I 0.755
Lus10023711.g Linum usitatissimum Lus10023711.g I 0.741
Gorai.005G054900 Gossypium raimondii Gorai.005G054900 I 0.739
Solyc05g053150.1 Solanum lycopersicum Solyc05g053150.1 I 0.736
mgf004640m Mimulus guttatus mgf004640m I 0.736
Aquca_002_00902 Aquilegia coerulea Aquca_002_00902 I 0.735
Gorai.006G254200 Gossypium raimondii Gorai.006G254200 I 0.732
PGSC0003DMG400027202 Solanum tuberosum PGSC0003DMG400027202 I 0.732
Cagra.15509s0001 Capsella grandiflora Cagra.15509s0001 I 0.730
Carubv10007255m.g Capsella rubella Carubv10007255m.g I 0.730
Pavir.Ga01308 Panicum virgatum Pavir.Ga01308 I 0.730
Si010822m.g Setaria italica Si010822m.g I 0.730
AtMYB79 Arabidopsis thaliana AT4G13480 I 0.728
fgenesh2_kg.9__1__AT4G13480.1 Arabidopsis lyrata fgenesh2_kg.9__1__AT4G13480.1 I 0.728
Ciclev10006914m.g Citrus clementina Ciclev10006914m.g I 0.727
fgenesh2_kg.3__2645__AT3G24310.1 Arabidopsis lyrata fgenesh2_kg.3__2645__AT3G24310.1 I 0.727
TCM_021037 Theobroma cacao TCM_021037 I 0.727
Carubv10014367m.g Capsella rubella Carubv10014367m.g I 0.727
Solyc09g090790.2 Solanum lycopersicum Solyc09g090790.2 I 0.727
PRUPE_ppa024234mg Prunus persica PRUPE_ppa024234mg I 0.727
cassava24389.valid.m1 Manihot esculenta cassava24389.valid.m1 I 0.727
MDP0000183451 Malus domestica MDP0000183451 I 0.727
Bra028369 Brassica rapa Bra028369 I 0.727
Cagra.0454s0003 Capsella grandiflora Cagra.0454s0003 I 0.727
orange1.1g047839m.g Citrus sinensis orange1.1g047839m.g I 0.727
GLYMA17G17560 Glycine max GLYMA17G17560 I 0.727
Cla021798 Citrullus lanatus Cla021798 I 0.727
Pm009050 Prunus mume Pm009050 I 0.727
GLYMA10G26681 Glycine max GLYMA10G26681 I 0.727
Ca_20437 Cicer arietinum Ca_20437 I 0.727
Cucsa.255900 Cucumis sativus Cucsa.255900 I 0.727
PRUPE_ppa017942mg Prunus persica PRUPE_ppa017942mg I 0.727
VIT_05s0049g02260 Vitis vinifera VIT_05s0049g02260 I 0.727
Bostr.19424s0195 Boechera stricta Bostr.19424s0195 I 0.727
Thhalv10002634m.g Eutrema salsugineum Thhalv10002634m.g I 0.727
Bostr.2021s0106 Boechera stricta Bostr.2021s0106 I 0.727
Bra001941 Brassica rapa Bra001941 I 0.727
Bo1g098860 Brassica oleracea Bo1g098860 I 0.727
Bo3g083130 Brassica oleracea Bo3g083130 I 0.727
POPTR_0010s07450 Populus trichocarpa POPTR_0010s07450 I 0.727
MTR_1g045610 Medicago truncatula MTR_1g045610 I 0.727
PGSC0003DMG400001504 Solanum tuberosum PGSC0003DMG400001504 I 0.727
MYB305 Arabidopsis thaliana AT3G24310 I 0.727
Gorai.006G073500 Gossypium raimondii Gorai.006G073500 I 0.727
SapurV1A.0096s0360 Salix purpurea SapurV1A.0096s0360 I 0.727
MDP0000133412 Malus domestica MDP0000133412 I 0.727
evm.TU.supercontig_59.23 Carica papaya evm.TU.supercontig_59.23 I 0.727
gene28293-v1.0-hybrid Fragaria vesca gene28293-v1.0-hybrid I 0.727
Cucsa.383230 Cucumis sativus Cucsa.383230 I 0.723
Bra015029 Brassica rapa Bra015029 I 0.723
Cla007745 Citrullus lanatus Cla007745 I 0.723
Bo7g033260 Brassica oleracea Bo7g033260 I 0.723
ORUFI02G25650 Oryza rufipogon ORUFI02G25650 I 0.722
OMERI02G23750 Oryza meridionalis OMERI02G23750 I 0.722
ONIVA09G12460 Oryza nivara ONIVA09G12460 I 0.722
OPUNC02G22200 Oryza punctata OPUNC02G22200 I 0.722
ORGLA02G0210000 Oryza glaberrima ORGLA02G0210000 I 0.722
BGIOSGA006030 Oryza indica BGIOSGA006030 I 0.722
OB02G31640 Oryza brachyantha OB02G31640 I 0.722
MLOC_6786 Hordeum vulgare MLOC_6786 I 0.722
Pavir.J37992 Panicum virgatum Pavir.J37992 I 0.722
GRMZM2G027697 Zea mays GRMZM2G027697 I 0.722
Si018007m.g Setaria italica Si018007m.g I 0.722
OBART02G24300 Oryza barthii OBART02G24300 I 0.722
Sb04g026210 Sorghum bicolor Sb04g026210 I 0.722
Pavir.Aa01294 Panicum virgatum Pavir.Aa01294 I 0.722
Traes_6BL_8E4A831B6 Triticum aestivum Traes_6BL_8E4A831B6 I 0.722
OS02G0618400 Oryza sativa OS02G0618400 I 0.722
BGIOSGA014750 Oryza indica BGIOSGA014750 I 0.721
Ca_07872 Cicer arietinum Ca_07872 I 0.721
LPERR04G14700 Leersia perrieri LPERR04G14700 I 0.721
OS04G0508500 Oryza sativa OS04G0508500 I 0.721
ORGLA04G0153500 Oryza glaberrima ORGLA04G0153500 I 0.721
ORUFI04G19690 Oryza rufipogon ORUFI04G19690 I 0.721
OB04G25360 Oryza brachyantha OB04G25360 I 0.721
Lus10014453.g Linum usitatissimum Lus10014453.g I 0.717
GLYMA04G26650 Glycine max GLYMA04G26650 I 0.716
GLYMA20G34140 Glycine max GLYMA20G34140 I 0.716
GLYMA06G38340 Glycine max GLYMA06G38340 I 0.716
GLYMA18G50881 Glycine max GLYMA18G50881 I 0.714
OGLUM02G24660 Oryza glumaepatula OGLUM02G24660 I 0.713
MTR_1g073170 Medicago truncatula MTR_1g073170 I 0.713
Eucgr.H02896 Eucalyptus grandis Eucgr.H02896 I 0.711
GLYMA20G20980 Glycine max GLYMA20G20980 I 0.710
cassava24463.valid.m1 Manihot esculenta cassava24463.valid.m1 I 0.705
GLYMA10G33450 Glycine max GLYMA10G33450 I 0.701
GSMUA_Achr1G03450_001 Musa acuminata GSMUA_Achr1G03450_001 I 0.700
GLYMA15G14190 Glycine max GLYMA15G14190 I 0.699
Aquca_025_00059 Aquilegia coerulea Aquca_025_00059 I 0.697
F775_06959 Aegilops tauschii F775_06959 I 0.695
TRIUR3_18020 Triticum urartu TRIUR3_18020 I 0.695
Traes_2AL_605C25CDF Triticum aestivum Traes_2AL_605C25CDF I 0.695
GLYMA05G35050 Glycine max GLYMA05G35050 I 0.694
VIT_08s0007g07230 Vitis vinifera VIT_08s0007g07230 I 0.693
GRMZM2G043792 Zea mays GRMZM2G043792 I 0.692
POPTR_0008s17350 Populus trichocarpa POPTR_0008s17350 I 0.689
GLYMA08G27660 Glycine max GLYMA08G27660 I 0.688
PRUPE_ppa006730mg Prunus persica PRUPE_ppa006730mg I 0.685
Gorai.007G350500 Gossypium raimondii Gorai.007G350500 I 0.685
SapurV1A.0553s0100 Salix purpurea SapurV1A.0553s0100 I 0.684
SapurV1A.0553s0110 Salix purpurea SapurV1A.0553s0110 I 0.684
cassava6348.valid.m1 Manihot esculenta cassava6348.valid.m1 I 0.682
POPTR_0003s21120 Populus trichocarpa POPTR_0003s21120 I 0.682
cassava9274.m1 Manihot esculenta cassava9274.m1 I 0.682
MDP0000791870 Malus domestica MDP0000791870 I 0.682
evm.TU.supercontig_119.55 Carica papaya evm.TU.supercontig_119.55 I 0.682
TCM_024180 Theobroma cacao TCM_024180 I 0.682
MDP0000655330 Malus domestica MDP0000655330 I 0.682
Eucgr.B03606 Eucalyptus grandis Eucgr.B03606 I 0.682
MDP0000723614 Malus domestica MDP0000723614 I 0.682
SapurV1A.0081s0400 Salix purpurea SapurV1A.0081s0400 I 0.682
Aquca_003_00309 Aquilegia coerulea Aquca_003_00309 I 0.678
Pavir.J28445 Panicum virgatum Pavir.J28445 I 0.677
Pavir.J39490 Panicum virgatum Pavir.J39490 I 0.677
Traes_6DL_FDFCBA57D1 Triticum aestivum Traes_6DL_FDFCBA57D1 I 0.677
Traes_6DL_FDFCBA57D Triticum aestivum Traes_6DL_FDFCBA57D I 0.677
Traes_6AL_89BA7115C Triticum aestivum Traes_6AL_89BA7115C I 0.677
Solyc01g005660.1 Solanum lycopersicum Solyc01g005660.1 I 0.677
F775_23572 Aegilops tauschii F775_23572 I 0.677
TRIUR3_31527 Triticum urartu TRIUR3_31527 I 0.677
Si035722m.g Setaria italica Si035722m.g I 0.677
VIT_17s0000g03560 Vitis vinifera VIT_17s0000g03560 I 0.676
POPTR_0019s05210 Populus trichocarpa POPTR_0019s05210 I 0.674
Thhalv10026896m.g Eutrema salsugineum Thhalv10026896m.g I 0.674
SapurV1A.0598s0010 Salix purpurea SapurV1A.0598s0010 I 0.674
AMTR_s00039p00172240 Amborella trichopoda AMTR_s00039p00172240 I 0.670
Eucgr.K01504 Eucalyptus grandis Eucgr.K01504 I 0.668
Eucgr.A02110 Eucalyptus grandis Eucgr.A02110 I 0.668
orange1.1g040726m.g Citrus sinensis orange1.1g040726m.g I 0.667
SapurV1A.1276s0050 Salix purpurea SapurV1A.1276s0050 I 0.667
POPTR_0013s05300 Populus trichocarpa POPTR_0013s05300 I 0.667
Ciclev10015648m.g Citrus clementina Ciclev10015648m.g I 0.667
TCM_025910 Theobroma cacao TCM_025910 I 0.667
chr1.CM0163.50.nc Lotus japonicus chr1.CM0163.50.nc I 0.666
SapurV1A.0918s0130 Salix purpurea SapurV1A.0918s0130 I 0.665
POPTR_0001s04240 Populus trichocarpa POPTR_0001s04240 I 0.665
GSMUA_Achr11G02410_001 Musa acuminata GSMUA_Achr11G02410_001 I 0.665
GLYMA08G04670 Glycine max GLYMA08G04670 I 0.664
SapurV1A.0021s0310 Salix purpurea SapurV1A.0021s0310 I 0.661
Cagra.1111s0025 Capsella grandiflora Cagra.1111s0025 I 0.661
Carubv10021411m.g Capsella rubella Carubv10021411m.g I 0.661
GSMUA_Achr11G13200_001 Musa acuminata GSMUA_Achr11G13200_001 I 0.661