Bra036202 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra036202 T268113_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATMYB121
M07091_2.00 		Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN		 Dap-seq
OMalley et al.(2016)
MYB121_col_a 		0.856 0.935
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.667 0.720
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.667 0.720
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.663 0.656
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra036202.1-P Myb 29 76
Bra036202.1-P Myb 82 127

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g009020 Brassica oleracea Bo9g009020 I 0.886
Bo7g088650 Brassica oleracea Bo7g088650 I 0.874
Bra025410 Brassica rapa Bra025410 I 0.874
Cagra.1138s0003 Capsella grandiflora Cagra.1138s0003 I 0.859
Carubv10018530m.g Capsella rubella Carubv10018530m.g I 0.859
ATMYB121 Arabidopsis thaliana AT3G30210 D 0.856
Bostr.0556s0619 Boechera stricta Bostr.0556s0619 I 0.856
ATMYB121 Arabidopsis lyrata fgenesh2_kg.5__710__AT3G30210.1 I 0.851
Gorai.001G207500 Gossypium raimondii Gorai.001G207500 I 0.841
Eucgr.I02057 Eucalyptus grandis Eucgr.I02057 I 0.830
Bra020744 Brassica rapa Bra020744 I 0.826
TCM_018971 Theobroma cacao TCM_018971 I 0.820
ATMYB121 Vitis vinifera VIT_14s0083g01060 I 0.819
Thhalv10005370m.g Eutrema salsugineum Thhalv10005370m.g I 0.818
POPTR_0004s11720 Populus trichocarpa POPTR_0004s11720 I 0.816
POPTR_0017s13370 Populus trichocarpa POPTR_0017s13370 I 0.816
cassava9891.m1 Manihot esculenta cassava9891.m1 I 0.815
Ciclev10013466m.g Citrus clementina Ciclev10013466m.g I 0.814
orange1.1g047854m.g Citrus sinensis orange1.1g047854m.g I 0.814
PRUPE_ppa016385mg Prunus persica PRUPE_ppa016385mg I 0.813
POPTR_0004s11460 Populus trichocarpa POPTR_0004s11460 I 0.813
Pm015392 Prunus mume Pm015392 I 0.809
PGSC0003DMG400001376 Solanum tuberosum PGSC0003DMG400001376 I 0.805
Solyc02g089190.1 Solanum lycopersicum Solyc02g089190.1 I 0.805
SapurV1A.0323s0160 Salix purpurea SapurV1A.0323s0160 I 0.799
MDP0000286143 Malus domestica MDP0000286143 I 0.797
Aquca_002_00902 Aquilegia coerulea Aquca_002_00902 I 0.792
Gorai.001G090100 Gossypium raimondii Gorai.001G090100 I 0.790
Cucsa.238540 Cucumis sativus Cucsa.238540 I 0.785
evm.TU.supercontig_14.220 Carica papaya evm.TU.supercontig_14.220 I 0.782
Cla016762 Citrullus lanatus Cla016762 I 0.781
mgf002201m Mimulus guttatus mgf002201m I 0.780
Lus10034372.g Linum usitatissimum Lus10034372.g I 0.776
Lus10005079.g Linum usitatissimum Lus10005079.g I 0.763
Gorai.006G254200 Gossypium raimondii Gorai.006G254200 I 0.747
GLYMA18G50891 Glycine max GLYMA18G50891 I 0.744
mgf004640m Mimulus guttatus mgf004640m I 0.743
Solyc05g053150.1 Solanum lycopersicum Solyc05g053150.1 I 0.743
PGSC0003DMG400027202 Solanum tuberosum PGSC0003DMG400027202 I 0.740
Gorai.005G054900 Gossypium raimondii Gorai.005G054900 I 0.740
Lus10023711.g Linum usitatissimum Lus10023711.g I 0.738
Bra015029 Brassica rapa Bra015029 I 0.738
Bo7g033260 Brassica oleracea Bo7g033260 I 0.738
evm.TU.supercontig_59.23 Carica papaya evm.TU.supercontig_59.23 I 0.734
Pm009050 Prunus mume Pm009050 I 0.734
Cla021798 Citrullus lanatus Cla021798 I 0.734
orange1.1g047839m.g Citrus sinensis orange1.1g047839m.g I 0.734
gene28293-v1.0-hybrid Fragaria vesca gene28293-v1.0-hybrid I 0.734
PRUPE_ppa024234mg Prunus persica PRUPE_ppa024234mg I 0.734
Cla007745 Citrullus lanatus Cla007745 I 0.734
cassava24389.valid.m1 Manihot esculenta cassava24389.valid.m1 I 0.734
Gorai.006G073500 Gossypium raimondii Gorai.006G073500 I 0.734
Cucsa.255900 Cucumis sativus Cucsa.255900 I 0.734
TCM_021037 Theobroma cacao TCM_021037 I 0.734
Cucsa.383230 Cucumis sativus Cucsa.383230 I 0.734
VIT_05s0049g02260 Vitis vinifera VIT_05s0049g02260 I 0.734
Bostr.19424s0195 Boechera stricta Bostr.19424s0195 I 0.734
Cagra.0454s0003 Capsella grandiflora Cagra.0454s0003 I 0.734
Bo3g083130 Brassica oleracea Bo3g083130 I 0.734
Bostr.2021s0106 Boechera stricta Bostr.2021s0106 I 0.734
Bo1g098860 Brassica oleracea Bo1g098860 I 0.734
GLYMA10G26681 Glycine max GLYMA10G26681 I 0.734
Thhalv10002634m.g Eutrema salsugineum Thhalv10002634m.g I 0.734
fgenesh2_kg.3__2645__AT3G24310.1 Arabidopsis lyrata fgenesh2_kg.3__2645__AT3G24310.1 I 0.734
Bra001941 Brassica rapa Bra001941 I 0.734
Ciclev10006914m.g Citrus clementina Ciclev10006914m.g I 0.734
Bra028369 Brassica rapa Bra028369 I 0.734
Carubv10014367m.g Capsella rubella Carubv10014367m.g I 0.734
GLYMA17G17560 Glycine max GLYMA17G17560 I 0.734
MYB305 Arabidopsis thaliana AT3G24310 I 0.734
Sb04g026210 Sorghum bicolor Sb04g026210 I 0.733
BGIOSGA006030 Oryza indica BGIOSGA006030 I 0.733
OS02G0618400 Oryza sativa OS02G0618400 I 0.733
Si018007m.g Setaria italica Si018007m.g I 0.733
fgenesh2_kg.9__1__AT4G13480.1 Arabidopsis lyrata fgenesh2_kg.9__1__AT4G13480.1 I 0.733
Pavir.Aa01294 Panicum virgatum Pavir.Aa01294 I 0.733
ORUFI02G25650 Oryza rufipogon ORUFI02G25650 I 0.733
ORGLA02G0210000 Oryza glaberrima ORGLA02G0210000 I 0.733
AtMYB79 Arabidopsis thaliana AT4G13480 I 0.733
Pavir.J37992 Panicum virgatum Pavir.J37992 I 0.733
MLOC_6786 Hordeum vulgare MLOC_6786 I 0.733
GRMZM2G027697 Zea mays GRMZM2G027697 I 0.733
Traes_6BL_8E4A831B6 Triticum aestivum Traes_6BL_8E4A831B6 I 0.733
OBART02G24300 Oryza barthii OBART02G24300 I 0.733
OB02G31640 Oryza brachyantha OB02G31640 I 0.733
OMERI02G23750 Oryza meridionalis OMERI02G23750 I 0.733
ONIVA09G12460 Oryza nivara ONIVA09G12460 I 0.733
OPUNC02G22200 Oryza punctata OPUNC02G22200 I 0.733
Ca_07872 Cicer arietinum Ca_07872 I 0.732
Carubv10007255m.g Capsella rubella Carubv10007255m.g I 0.731
POPTR_0010s07450 Populus trichocarpa POPTR_0010s07450 I 0.731
MDP0000183451 Malus domestica MDP0000183451 I 0.731
SapurV1A.0096s0360 Salix purpurea SapurV1A.0096s0360 I 0.731
MDP0000133412 Malus domestica MDP0000133412 I 0.731
PRUPE_ppa017942mg Prunus persica PRUPE_ppa017942mg I 0.731
Cagra.15509s0001 Capsella grandiflora Cagra.15509s0001 I 0.731
GLYMA18G50881 Glycine max GLYMA18G50881 I 0.730
Ca_20437 Cicer arietinum Ca_20437 I 0.729
Solyc09g090790.2 Solanum lycopersicum Solyc09g090790.2 I 0.729
Pavir.Ga01308 Panicum virgatum Pavir.Ga01308 I 0.729
PGSC0003DMG400001504 Solanum tuberosum PGSC0003DMG400001504 I 0.729
Si010822m.g Setaria italica Si010822m.g I 0.729
MTR_1g045610 Medicago truncatula MTR_1g045610 I 0.729
OGLUM02G24660 Oryza glumaepatula OGLUM02G24660 I 0.724
GLYMA06G38340 Glycine max GLYMA06G38340 I 0.723
GLYMA04G26650 Glycine max GLYMA04G26650 I 0.723
Aquca_003_00309 Aquilegia coerulea Aquca_003_00309 I 0.722
ORGLA04G0153500 Oryza glaberrima ORGLA04G0153500 I 0.720
OB04G25360 Oryza brachyantha OB04G25360 I 0.720
GLYMA20G34140 Glycine max GLYMA20G34140 I 0.720
ORUFI04G19690 Oryza rufipogon ORUFI04G19690 I 0.720
LPERR04G14700 Leersia perrieri LPERR04G14700 I 0.720
BGIOSGA014750 Oryza indica BGIOSGA014750 I 0.720
OS04G0508500 Oryza sativa OS04G0508500 I 0.720
GLYMA20G20980 Glycine max GLYMA20G20980 I 0.717
F775_06959 Aegilops tauschii F775_06959 I 0.714
TRIUR3_18020 Triticum urartu TRIUR3_18020 I 0.714
Traes_2AL_605C25CDF Triticum aestivum Traes_2AL_605C25CDF I 0.714
Eucgr.H02896 Eucalyptus grandis Eucgr.H02896 I 0.714
cassava24463.valid.m1 Manihot esculenta cassava24463.valid.m1 I 0.713
VIT_08s0007g07230 Vitis vinifera VIT_08s0007g07230 I 0.713
Lus10014453.g Linum usitatissimum Lus10014453.g I 0.712
MTR_1g073170 Medicago truncatula MTR_1g073170 I 0.710
GLYMA05G35050 Glycine max GLYMA05G35050 I 0.707
GLYMA15G14190 Glycine max GLYMA15G14190 I 0.706
GLYMA10G33450 Glycine max GLYMA10G33450 I 0.705
Eucgr.B03606 Eucalyptus grandis Eucgr.B03606 I 0.703
evm.TU.supercontig_119.55 Carica papaya evm.TU.supercontig_119.55 I 0.703
cassava6348.valid.m1 Manihot esculenta cassava6348.valid.m1 I 0.703
cassava9274.m1 Manihot esculenta cassava9274.m1 I 0.703
Pavir.J28445 Panicum virgatum Pavir.J28445 I 0.703
POPTR_0003s21120 Populus trichocarpa POPTR_0003s21120 I 0.703
Pavir.J39490 Panicum virgatum Pavir.J39490 I 0.703
SapurV1A.0081s0400 Salix purpurea SapurV1A.0081s0400 I 0.703
PRUPE_ppa006730mg Prunus persica PRUPE_ppa006730mg I 0.703
TCM_024180 Theobroma cacao TCM_024180 I 0.703
Si035722m.g Setaria italica Si035722m.g I 0.703
GRMZM2G043792 Zea mays GRMZM2G043792 I 0.703
MDP0000723614 Malus domestica MDP0000723614 I 0.703
MDP0000655330 Malus domestica MDP0000655330 I 0.703
Gorai.007G350500 Gossypium raimondii Gorai.007G350500 I 0.703
MDP0000791870 Malus domestica MDP0000791870 I 0.703
SapurV1A.0553s0100 Salix purpurea SapurV1A.0553s0100 I 0.701
SapurV1A.0553s0110 Salix purpurea SapurV1A.0553s0110 I 0.701
Aquca_025_00059 Aquilegia coerulea Aquca_025_00059 I 0.698
Solyc01g005660.1 Solanum lycopersicum Solyc01g005660.1 I 0.698
POPTR_0019s05210 Populus trichocarpa POPTR_0019s05210 I 0.694
POPTR_0008s17350 Populus trichocarpa POPTR_0008s17350 I 0.693
GSMUA_Achr1G03450_001 Musa acuminata GSMUA_Achr1G03450_001 I 0.692
GLYMA08G27660 Glycine max GLYMA08G27660 I 0.690
Eucgr.K01504 Eucalyptus grandis Eucgr.K01504 I 0.689
Eucgr.A02110 Eucalyptus grandis Eucgr.A02110 I 0.689
Traes_6AL_89BA7115C Triticum aestivum Traes_6AL_89BA7115C I 0.689
SapurV1A.0598s0010 Salix purpurea SapurV1A.0598s0010 I 0.689
Traes_6DL_FDFCBA57D Triticum aestivum Traes_6DL_FDFCBA57D I 0.689
TRIUR3_31527 Triticum urartu TRIUR3_31527 I 0.689
F775_23572 Aegilops tauschii F775_23572 I 0.689
Traes_6DL_FDFCBA57D1 Triticum aestivum Traes_6DL_FDFCBA57D1 I 0.689
orange1.1g040726m.g Citrus sinensis orange1.1g040726m.g I 0.687
Ciclev10015648m.g Citrus clementina Ciclev10015648m.g I 0.687
SapurV1A.1276s0050 Salix purpurea SapurV1A.1276s0050 I 0.687
TCM_025910 Theobroma cacao TCM_025910 I 0.687
POPTR_0013s05300 Populus trichocarpa POPTR_0013s05300 I 0.687
SapurV1A.0918s0130 Salix purpurea SapurV1A.0918s0130 I 0.685
POPTR_0001s04240 Populus trichocarpa POPTR_0001s04240 I 0.685
AMTR_s00039p00172240 Amborella trichopoda AMTR_s00039p00172240 I 0.684
VIT_17s0000g03560 Vitis vinifera VIT_17s0000g03560 I 0.683
Bo7g050560 Brassica oleracea Bo7g050560 I 0.682
Bra012482 Brassica rapa Bra012482 I 0.682
Ciclev10021479m.g Citrus clementina Ciclev10021479m.g I 0.682
orange1.1g043269m.g Citrus sinensis orange1.1g043269m.g I 0.682
Thhalv10026896m.g Eutrema salsugineum Thhalv10026896m.g I 0.681
Cagra.1111s0025 Capsella grandiflora Cagra.1111s0025 I 0.677
Carubv10021411m.g Capsella rubella Carubv10021411m.g I 0.677
GLYMA08G04670 Glycine max GLYMA08G04670 I 0.677
Solyc03g119370.1 Solanum lycopersicum Solyc03g119370.1 I 0.676
Bra004041 Brassica rapa Bra004041 I 0.676
Bo6g097180 Brassica oleracea Bo6g097180 I 0.676
PGSC0003DMG400005641 Solanum tuberosum PGSC0003DMG400005641 I 0.676
cassava27189.m1 Manihot esculenta cassava27189.m1 I 0.674
Sb01g037110 Sorghum bicolor Sb01g037110 I 0.673
GRMZM2G134279 Zea mays GRMZM2G134279 I 0.673
MDP0000305363 Malus domestica MDP0000305363 I 0.672
VIT_06s0004g00570 Vitis vinifera VIT_06s0004g00570 I 0.671
Aquca_009_00493 Aquilegia coerulea Aquca_009_00493 I 0.671
Eucgr.B03985 Eucalyptus grandis Eucgr.B03985 I 0.671
Thhalv10008403m.g Eutrema salsugineum Thhalv10008403m.g I 0.669
Bra004297 Brassica rapa Bra004297 I 0.667
Bra033948 Brassica rapa Bra033948 I 0.667
Bo6g106730 Brassica oleracea Bo6g106730 I 0.667
MDP0000823458 Malus domestica MDP0000823458 I 0.667
LjT44F11.120.nd Lotus japonicus LjT44F11.120.nd I 0.667
Thhalv10018962m.g Eutrema salsugineum Thhalv10018962m.g I 0.667
MYB62 Arabidopsis thaliana AT1G68320 D 0.667
MYB62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001171 I 0.667
Bo2g057760 Brassica oleracea Bo2g057760 I 0.667
GLYMA20G25110 Glycine max GLYMA20G25110 I 0.667
Ca_05503 Cicer arietinum Ca_05503 I 0.667
Bostr.26959s0063 Boechera stricta Bostr.26959s0063 I 0.667
GLYMA10G41930 Glycine max GLYMA10G41930 I 0.667
MTR_1g110460 Medicago truncatula MTR_1g110460 I 0.667
Gorai.004G044000 Gossypium raimondii Gorai.004G044000 I 0.667
28271.m000023 Ricinus communis 28271.m000023 I 0.666
Aquca_041_00011 Aquilegia coerulea Aquca_041_00011 I 0.666
SapurV1A.0021s0310 Salix purpurea SapurV1A.0021s0310 I 0.665
GSMUA_Achr11G02410_001 Musa acuminata GSMUA_Achr11G02410_001 I 0.664
GSMUA_Achr11G24690_001 Musa acuminata GSMUA_Achr11G24690_001 I 0.664
SapurV1A.1276s0060 Salix purpurea SapurV1A.1276s0060 I 0.663
Traes_4AS_E4294BADC Triticum aestivum Traes_4AS_E4294BADC I 0.663
LPERR03G13320 Leersia perrieri LPERR03G13320 I 0.663
MLOC_17928 Hordeum vulgare MLOC_17928 I 0.663
OB03G25040 Oryza brachyantha OB03G25040 I 0.663
MYB2 Oryza sativa OS03G0315400 I 0.663
GLYMA14G24500 Glycine max GLYMA14G24500 I 0.663
GLYMA13G09980 Glycine max GLYMA13G09980 I 0.663
AMTR_s00068p00118480 Amborella trichopoda AMTR_s00068p00118480 I 0.663
BGIOSGA010857 Oryza indica BGIOSGA010857 I 0.663
BRADI1G64140 Brachypodium distachyon BRADI1G64140 I 0.663
F775_14949 Aegilops tauschii F775_14949 I 0.663
POPTR_0013s05310 Populus trichocarpa POPTR_0013s05310 I 0.663
ORGLA03G0145100 Oryza glaberrima ORGLA03G0145100 I 0.663
Q2TCH0_PETHY Petunia x hybrida Q2TCH0_PETHY D 0.663
gene25149-v1.0-hybrid Fragaria vesca gene25149-v1.0-hybrid I 0.663
Traes_4DL_9023F3504 Triticum aestivum Traes_4DL_9023F3504 I 0.663
Gorai.007G260600 Gossypium raimondii Gorai.007G260600 I 0.663
Cagra.2231s0026 Capsella grandiflora Cagra.2231s0026 I 0.662
PK22268.1 Cannabis sativa PK22268.1 I 0.662
evm.TU.supercontig_145.21 Carica papaya evm.TU.supercontig_145.21 I 0.662
Bostr.12659s0423 Boechera stricta Bostr.12659s0423 I 0.662
mgf001865m Mimulus guttatus mgf001865m I 0.662
MDP0000259898 Malus domestica MDP0000259898 I 0.662
PRUPE_ppa008877mg Prunus persica PRUPE_ppa008877mg I 0.662
SapurV1A.0530s0020 Salix purpurea SapurV1A.0530s0020 I 0.662
Pm025177 Prunus mume Pm025177 I 0.662
AMTR_s00068p00092800 Amborella trichopoda AMTR_s00068p00092800 I 0.661
AMTR_s00068p00097220 Amborella trichopoda AMTR_s00068p00097220 I 0.661
MTR_3g083540 Medicago truncatula MTR_3g083540 I 0.661