Carubv10003231m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10003231m.g T286236_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00 		Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080 		0.678 0.761
SRM1
M07121_2.00 		Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a 		0.678 0.761
SRM1
M07122_2.00 		Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b 		0.678 0.761
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10003231m Myb 10 59
Carubv10003231m Myb 118 163

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.25796s0001 Capsella grandiflora Cagra.25796s0001 I 0.907
Al_scaffold_0006_2242 Arabidopsis lyrata Al_scaffold_0006_2242 N 0.799
Cagra.4850s0001 Capsella grandiflora Cagra.4850s0001 N 0.792
Carubv10027693m.g Capsella rubella Carubv10027693m.g N 0.785
AT5G23650 Arabidopsis thaliana AT5G23650 N 0.772
Bostr.10199s0068 Boechera stricta Bostr.10199s0068 I 0.731
Bra009699 Brassica rapa Bra009699 I 0.714
Bo7g097510 Brassica oleracea Bo7g097510 I 0.705
Thhalv10005383m.g Eutrema salsugineum Thhalv10005383m.g I 0.704
Bo2g160810 Brassica oleracea Bo2g160810 N 0.694
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.690
Bra029380 Brassica rapa Bra029380 N 0.687
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.678
SRM1 Arabidopsis thaliana AT5G08520 D 0.678
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.673
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.668
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.668