Bostr.10199s0068 (Boechera stricta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Bostr.10199s0068 T285674_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00 		Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080 		0.750 0.824
SRM1
M07121_2.00 		Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a 		0.750 0.824
SRM1
M07122_2.00 		Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b 		0.750 0.824
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.10199s0068.1.p Myb 10 58
Bostr.10199s0068.1.p Myb 120 165

Links

Other Myb/SANT family TFs
Other Boechera stricta TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10005383m.g Eutrema salsugineum Thhalv10005383m.g I 0.793
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.761
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.750
SRM1 Arabidopsis thaliana AT5G08520 D 0.750
Al_scaffold_0006_2242 Arabidopsis lyrata Al_scaffold_0006_2242 N 0.748
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.745
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.739
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.739
Carubv10003231m.g Capsella rubella Carubv10003231m.g I 0.731
Cagra.25796s0001 Capsella grandiflora Cagra.25796s0001 I 0.730
Bra009699 Brassica rapa Bra009699 I 0.721
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.720
AT5G23650 Arabidopsis thaliana AT5G23650 N 0.720
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.720
Bo7g097510 Brassica oleracea Bo7g097510 I 0.712
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.709
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.709
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.709
TCM_007672 Theobroma cacao TCM_007672 I 0.709
Bo3g004970 Brassica oleracea Bo3g004970 I 0.702
Bo9g174380 Brassica oleracea Bo9g174380 I 0.702
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.699
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.695
Cla020348 Citrullus lanatus Cla020348 I 0.695
Bo2g160810 Brassica oleracea Bo2g160810 N 0.692
Bo2g009130 Brassica oleracea Bo2g009130 I 0.691
Bra028654 Brassica rapa Bra028654 I 0.691
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.690
Bra029380 Brassica rapa Bra029380 N 0.685
Bra009346 Brassica rapa Bra009346 I 0.682
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.678
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.676
30131.m007263 Ricinus communis 30131.m007263 I 0.676
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.673
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.671
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.671
PGSC0003DMG400025303 Solanum tuberosum PGSC0003DMG400025303 I 0.670
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.670
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.670
Cagra.4850s0001 Capsella grandiflora Cagra.4850s0001 N 0.662